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Dear all,
I am using longranger align for mapping tetraploid plant samples (10x reads) (Potato-tetraploid) on my reference. Overall alignment rate is 95%.
For variant calling i am interested in ch…
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How does it take to run longranger wgs on a mouse genome?
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I think it would be good to have a module for [LONGRANGER]
- [x] This module does not exist yet with the [`nf-core modules list`](https://github.com/nf-core/tools#list-modules) command
- [x] Ther…
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I think it would be good to have a module for [LONGRANGER]
- [x] This module does not exist yet with the [`nf-core modules list`](https://github.com/nf-core/tools#list-modules) command
- [x] Ther…
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Hi,
What do you thing about packaging longranger in Conda package by comiting into the [BioConda repository](https://github.com/bioconda/bioconda-recipes)
Best regards
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Hello,
thanks for providing this tool, after reading the preprint I wanted to try it out.
After the installation and adapting the `config.properties` file I tried to run it on the example dataset …
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Does EMA support mapping reads in the Longranger basic FASTQ format, where the corrected barcode is in the BX:Z tag of the FASTQ header?
```
@E00316:145:HMVG3CCXX:5:1214:6786:3014 BX:Z:AAACACCAGACAA…
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Hi,
I would be curious to hear whether you expect the possorted_bam.bam output by "LongRanger align" (rather than the phased_possorted_bam.bam output by "LongRanter wgs") should work adequately in li…
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I would like to request a clear example of the commands to run to generate the required input for LEVIATHAN. By reading the preprint and user comments I am able to piece together that I need to use lo…
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If i run without parameters, i get the usage as expected.
then if i run with parameters
scaff10x -nodes 30 funestus_redbean.purged.fa bamtofastq_S1_L000_R1_001.fastq.gz bamtofastq_S1_L000_R2_001.f…