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Hi @CSU-KangHu
Thank you for your tool. I am trying to run the pipeline, using the test data as input (demo/genome.fa). I followed the instructions on running it via Nextflow. I tried to use eithe…
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Hi,
I would like to know whether the "Total interspersed repeats" percentage in the tbl output file is the sum of the "Retroelements", "DNA transposons", "Rolling-circles", and "Unclassified". When …
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Hello！
In TEanno.gff3, TE_00000019 actually has multi-locus repeats on each chromosome, so do these TE_00000019 need to be merged and spliced again? Or do these transposons already contain the full L…
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**Reported by davpabenwo on 2012-02-20 12:19 UTC**
To allow for the classification of a non-genomic coding/pseudogenic gene structure.
I guess these would have to be child terms of CDS and also child…
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Hi,
I found that there are always too many LTRs no matter what sequences I provided.
For example,
1) helitronscanner(https://sourceforge.net/projects/helitronscanner/) results as input,
![imag…
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I would like to use the pipeline on a large plant genome. Would it be to run separately on chromosomes or directly on the entire genome? Are there any requirements for CPUs and RAM? Have you ever test…
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Hi @zhangrengang
As the title, my TEsorter version is 1.4.6, I use TEsorter to classify my EDTA's outcome(my interested species is an apple species). my code:
`TEsorter Gala_genome.fa.mod.EDTA.inta…
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- [x] Download the Genome from NCBI
GCF_000767585.1_PRJNA234474_Ca_dromedarius_V1.0_genomic.fna.gz`
### LTR-Detection
- [x] **Create index** _find pairs of maximal exact direct repeats that a…
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Hi
I was running `RepeatModeler - 2.0.1` for my genome TE annotation, still return a high proportion `Unclassified` (33.39 %, 53% in total). I have checked the RepBase according to #128. But nothing …
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In ages file I see things like:
`RLC_family0_exemplar`
And in the fasta files, I got
```
RLG_singleton_family1616_LTR_12347_chr07_42270149_42278820
RLC_singleton_family1616_TRIM_2991_chr04_1387…