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Dear Benjamin,
Thank you so much for developing this wonderful tool. We are using it across multiple projects to identify contamination in our metagenomic datasets. Currently, we are analyzing a me…
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Hi!
GRNBoost2 produces an error at the very last step. The same happens when I use GENIE3. It seems to be a problem with Dask, however, I could not figure out what is going on.
**The code:**
``…
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Determine which ontologies to use for transcriptomics data (meta data templates)
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(Meta)-transcriptomics data is stored in European Nucleotide Archive, ENA. However, there is no counts table but only sequences ([example](https://www.ebi.ac.uk/ena/browser/view/SAMEA13929756?show=ana…
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Dear Author,
It is a great honor to use such a meaningful algorithm. While testing with my own 10x spatial transcriptomics data, I encountered the following error. Could you please provide me with so…
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Description:
Proactive onboarding of services and models, with focus on SPARC and ANS neuroscience needs (e.g., by contacting authors of SPARC-relevant modeling publications).
Deliverable:
Servi…
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Good day,
I am eager to test this excellent tool on our data. I have seen in the tutorial and demo data that the vignette uses only one bulk RNA sample as well as an ST experiment.
Is it possib…
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Dear Professor,
I have a question how can I use the 6.5 PCW human embryonic heart dataset in another Model? For example, I want to use the CARD technique, it requires two types of input data:
1. s…
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Hello there
I did an analysis via CPDB for a comprehensive list of cells in my dataset out of a spatial transcriptomics analysis.
Now, I have a csv file out of the analysis shows the PPI between …
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I noticed some recent updates to the package and just couldn't wait to try it out. I used some old script I have with spatial data (not too old!) but got the following warning message which seemed new…
mvfki updated
11 months ago