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YangLabHKUST
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STitch3D
Construction of a 3D whole organism spatial atlas by joint modeling of multiple slices
https://stitch3d-tutorial.readthedocs.io/en/latest/index.html#
MIT License
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Some problems in Visualization of UMAP plots
#34
lightoorange
opened
14 hours ago
0
Cannot find CCFv3 dataset
#33
lightoorange
opened
14 hours ago
0
slicestable.tsv,genes_new.txt,barcode_level_layer_map.tsv
#32
yxmsir
opened
6 days ago
2
Example 4 - KeyError: 'spatial'
#31
Leroy-Xiong
opened
1 week ago
1
Fail to find several datasets
#30
Leroy-Xiong
opened
1 week ago
1
unsupported operand type error in preprocessing
#29
lillyzhan
opened
2 months ago
3
Mouse brain dataset
#28
Super-LzzZ
closed
4 months ago
1
adult mouse brain dataset
#27
chenyhvvvv
closed
8 months ago
1
install error
#26
summus-kong
closed
8 months ago
2
TypeError: _detect_vcs() missing 2 required positional arguments: 'expected_vcs' and 'path'
#25
pengpengyang94
closed
8 months ago
7
Can not find latent variables
#24
cristalliao
closed
10 months ago
1
DLPFC dataset
#23
cristalliao
opened
10 months ago
4
Compare with other deconvolution methods
#22
cristalliao
opened
11 months ago
2
Where can I find the single cell RNAseq count data for each slice?
#21
cristalliao
opened
11 months ago
2
Problems in loading the human heart original dataset into R
#20
cristalliao
opened
11 months ago
3
Human heart dataset comparison with other methods
#19
cristalliao
opened
11 months ago
4
questions of using STitch3D
#18
MingLi-929
closed
1 year ago
4
How can I find cell type for Example 2 dataset?
#17
cristalliao
opened
1 year ago
1
Where is the code for Supplementary Information?
#16
cristalliao
opened
1 year ago
2
Can't find seurat_clust_1620.txt
#15
Peter-Fung
opened
1 year ago
1
Cannot find CCFv3 dataset
#14
cristalliao
closed
11 months ago
3
where can I download 'seurat_clust_1620.txt' and 'cluster_anno_table.csv' files ?
#13
Tidebear
closed
1 year ago
3
Cannot produce figure in Example 2 3D visualization in R
#12
cristalliao
closed
11 months ago
1
How to perform "scanpy" analysis in model_6PCW in Example 2?
#11
cristalliao
closed
11 months ago
5
Cannot find "clustering_result.csv" in the Example 1 mouse brain dataset
#10
cristalliao
closed
1 year ago
2
Cannot produce "results_human_heart_9PCW" and "results_human_heart_4.5-5PCW"
#9
cristalliao
closed
1 year ago
6
How can I find "genes_new.txt" dataset?
#8
cristalliao
closed
1 year ago
1
Cannot run the code in "Visualizing results in 2D" and save "clustering_result.csv"
#7
cristalliao
closed
1 year ago
4
How can I find "results_6PCW" dataset?
#6
cristalliao
closed
1 year ago
6
How can I find the file "slicestable.tsv"?
#5
cristalliao
closed
1 year ago
2
Cannot import the STitch3D package, how to solve this problem?
#4
cristalliao
closed
1 year ago
2
How can I find the file "all_cells_20200625.h5ad" and "snRNA_annotation_astro_subtypes_refined59_20200823.csv"?
#3
cristalliao
closed
1 year ago
3
Run without single cell RNA data?
#2
vladimirkovacevic
closed
11 months ago
1
How can i find this file(genes_new.txt)
#1
baoyulinn
closed
11 months ago
7