-
Whenever the pipline finishes successfully writing a file intended for downstream consumption, I'd like it to append a line to a special "checkout" file denoting the last modification time and the rel…
-
This ticket derives URL checking work done in https://github.com/microbiomedata/nmdc_automation/issues/186
All 79 metagenome_assembly_set records from nmdc:sty-11-547rwq94 have a different blade i…
-
![image (1)](https://github.com/user-attachments/assets/539e579b-4129-4afb-9baa-92fe5a8463ff)
Hi there,
I'm currently trying to run the program off a directory on an external hard drive (Cruc…
-
Hi
Can VALET be used to evaluate metagenome assemblies i.e. just a contigs file (without binning)?
Regards,
Aditya
-
**Workflow Name**
Metagenome Assembly
**Project URL**
https://nmdc-edge.org/admin/project?code=brFrthQj2C3PyUvj
**Additional Info**
```
' 0:00:07.478 34M / 579M INFO General …
-
Data portal search should support search by NMDC identifier (slot `id`) for the Database Class slots where the Range is a Class which contains `id` as a required slot
slots:
- data_object_se…
-
Hello,
I would very much like to use this tool for binning my Flye metagenome assemblies.
However, I ran into the following error:
```
graphmb --assembly Flye/ --outdir GraphMB --depth depths.tx…
-
## Structured standard
After multiple different approaches i am now confident in an approach. To create a set standard, i will redo the scripts so the same analysis and structure is withheld unregard…
-
Dear OPERA-MS creators,
Thanks for the great tool!
I am attempting to assemble a **very** large and complex metagenome (~5e9 150 bp PE reads or ~ 8e11 basepairs short reads) with about 16 gbs …
-
## Merging reads per hostplant
As a comparative measure against population based approach, we will assemble metagenomes using all CH and CO samples separately.
```
# New directory for hostplant …