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### Description of feature
In #362, we agreed that a yaml-based contrast sheet is more flexible than a csv-based sheet and is better suited to cover future developments of the pipeline. The aim of th…
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Hi Dr Shing Wan Choi,
Thanks a lot for your interesting work! I am trying to run the PRSet on my target datasets about Alzheimer's disease and ASD. But I wonder, do you have any recommendations on …
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Hi,
I have an issue running the code below with the mouse dataset.
gsc
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I implemented gsva on a small bulk RNA dataset and it worked well. However, when I implemented it on a large single-cell dataset along with msigdb genesets, the error occurred. My code and data type …
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Hi
Is this tool compatible with MSigDB pathways? If so, is there some example code available?
Thanks in advance.
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With kind regards
Tim
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Is there any possibility for the package to support collections that don't correspond to the human collections H, C1, ..., C8? For example accessing MH, M1, ..., M8 listed at the link below?
https:…
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See http://bioinf.wehi.edu.au/software/MSigDB/
This could be useful in all sorts of ways.
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We are hacking together the expected `*.rds` name for the MSigDB `GeneSetDb.*` objects based on version, species, and identifiers in the [`getMSigGeneSetDb` function](https://github.com/lianos/multiGS…
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您好！我根据notebook里面的提示找到了https://www.gsea-msigdb.org/gsea/msigdb/gene_families.jsp?ex=1，之后我点击Tumor Supression，跳转到了https://www.gsea-msigdb.org/gsea/msigdb/human/annotate.jsp 页面，我没有找到直接的数据集下载地址，我尝试了https:/…
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When using ```GSEABase::getGmt()```, a common function for reading in GMT files, I get an error saying that each ```setName``` must be distinct. This refers to column ```V1``` in the attached screensh…