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Hi,
I have an issue running the code below with the mouse dataset.
gsc
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Hello,
I was using decoupleR for pathway analysis in single cell.
I tried a few lines:
```R
msigdb
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Thank you for developing this useful tool. Do you have any plans to update it based on the 2023 release of MSigDB?
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Is there any possibility for the package to support collections that don't correspond to the human collections H, C1, ..., C8? For example accessing MH, M1, ..., M8 listed at the link below?
https:…
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Hi
Is this tool compatible with MSigDB pathways? If so, is there some example code available?
Thanks in advance.
--
With kind regards
Tim
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See http://bioinf.wehi.edu.au/software/MSigDB/
This could be useful in all sorts of ways.
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We are hacking together the expected `*.rds` name for the MSigDB `GeneSetDb.*` objects based on version, species, and identifiers in the [`getMSigGeneSetDb` function](https://github.com/lianos/multiGS…
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您好!我根据notebook里面的提示找到了https://www.gsea-msigdb.org/gsea/msigdb/gene_families.jsp?ex=1,之后我点击Tumor Supression,跳转到了https://www.gsea-msigdb.org/gsea/msigdb/human/annotate.jsp 页面,我没有找到直接的数据集下载地址,我尝试了https:/…
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Hello,
I was trying to use enricher function with MSigDB .gmt gene symbols (c2.cp.kegg.v7.2.symbols.gmt)
However I'm getting this error:
'rror in (function (..., row.names = NULL, check.rows = …
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I'm not using a docker. When I import study:
`./metaImport.py -s ../../../test/scripts/test_data/study_es_0/ -n -o`
Got the following error:
```
ABORTED!
java.lang.RuntimeException: java.la…