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- [ ] Check for GDC pipeline in nf-core or make one
- [ ] Check for trainings/workshops for learning purposes and share with the team
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### Description of the bug
Hello again!
I am encountering an issue while running the samurai pipeline in Nextflow.
After inspecting the log file , i think that the pipeline attempts to access…
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Hi,
I am running a nextflow pipeline and rMATS is part of the pipeline. All the steps run well except the rMATS step. How should I overcome this errror? See the attached log below for reference.
[…
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**Submitting author:** @Juke34 (Jacques Dainat)
**Repository:** https://github.com/Juke34/AliNe
**Branch with paper.md** (empty if default branch): main
**Version:** v1.0.0
**Editor:** Pending
**Revie…
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### Operating System
Ubuntu 22.04
### Other Linux
_No response_
### Workflow Version
wf-flu v1.2.3-g5290f79
### Workflow Execution
Command line (Cluster)
### Other workflow execution
_No resp…
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### Operating System
Ubuntu 22.04
### Other Linux
_No response_
### Workflow Version
v1.4.0
### Workflow Execution
Command line (Cluster)
### Other workflow execution
_No response_
### EPI2M…
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After few years of successful run, some upgrades can be done for workflow modernisation:
In order of priority:
1. Bring tertiary analysis to Nextflow, for a unified workflow
1.1 New repo: `sc…
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The `snakemake` pipeline should be translated to `nextflow` to reach more users. Don't hesitate to comment this issue to show your interest, else we keep it as a low priority
EDIT: I'm not very fam…
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### Description of the bug
I am having trouble getting the following test to work. Any clues to what I am doing wrong.
The command I ran was:
nextflow run nf-core/scrnaseq -profile test,docker --o…
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## Bug report
### Expected behavior and actual behavior
I am trying to run a pipeline that is defined in a private Github repository. The pipeline has a git submodule that is also private. I ru…