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When running AlphaFold 3 for sequential inference of protein complexes, a GPU memory overflow occurs during the processing of a second complex (with less tokens) after successfully processing a first …
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Following our discussion with @nekrut , I am creating an issue to outline essential components for creating a barebones HIV (or other short RNA virus) genomic analysis pipeline.
Key steps for ampl…
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### Description of the bug
I ran "nextflow run nf-core/cutandrun -profile test,conda" command after installing conda and nextflow following the instruction and got the error message
### Command used…
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# Overview
First, great pipeline, I like the way the key files and pages are automatically generated.
As I'm running the pipeline to work in the changes described in [improved_Kd_fitting](https:…
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As a bioinformatics analyst I want to generate a BED file from a gene panel for genomic test analysis so that I can use it as an input to an NGS pipeline tool.
- [ ] Get gene panel from panelapp, ref…
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Hi,
I fetched MultiQC with
```bash
curl -LOk https://github.com/ewels/MultiQC/archive/master.zip
tar -xf master.zip
cd MultiQC-master
pip install .
```
Via `where multiqc` I could also id…
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Hello. I'm working on T2T trio assembly, with approximately 90× HiFi reads, 115× ultralong ONT reads, and about 64× coverage of NGS reads from both parents. Below is the command I submitted:
```
…
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**Snakemake version**
8.10.0
snakemake-wrappers version : "v3.7.0/bio/multiqc"
**Describe the bug**
So, I have a bigger project, where in the end, I run multqc on reports generated by other …
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### Description
If inputs are missing for the process `FOODME2:REPORTING:HELPER_SAMPLE_REPORT` then piepline fails with following error messsage:
```
WARN: Input tuple does not match tuple declar…
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hi, eric.
Does the version of genome and transcipts gtf affect the results when we run the pipeline, which version would be better , we use GRCh38.p14.genome.fa and gencode.v45.chr_patch_hapl_scaff.…