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Dear Palantir developers, @ManuSetty
Palantir is an excellent tool for trajectory analysis, but I have a problem now.
My input is a published dataset containing Oligodendrocytes lineage cells(Cell …
x1han updated
1 month ago
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It would be great to extend the workflow with pseudotime analysis. Several customers would like to see this kind of analysis, see velocity or trajectory inference.
ktrns updated
2 years ago
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In the part 13.4.4 Pseudotime construction, there is a paragraph: The differentiation hierarchy in bone marrow is well understood. However, it is only know that the developmental process starts in the…
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Hi,
It would be great if you could provide an implementation of the plot_pseudotime_heatmap function in moncole-3-alpha with this version ?
Thanks
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Hi @flying-sheep ,
Is it possible to set multiple root cells before running pseudotime calculation with palantir?
I have multiple root stem cells in my tissue/data.
Best,
T
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Would pseudotime analysis be useful on functional data? Either alone or in combination with mRNA?
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Hi,
I tried `scTenifoldNet` and it gives interesting results. Is there already some R implementation of a pseudotime-guided subsampling, as you have described in your preprint?
All the best,
K…
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Hi,
Could you share the code of pseudotime analysis? Thanks a lot.
Best regards,
Kai
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Hello,
Thanks for developing such a great software. It is difficult for me to understand the results of associationTest and conditionTest.
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