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ktrns
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scrnaseq
Workflow for single-cell RNA-seq analysis using Seurat
MIT License
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Prerelease2 andpet
#117
andpet0101
opened
1 year ago
0
Ktrns release1
#116
ktrns
closed
1 year ago
0
Merge changes of master into dev branch
#115
ktrns
closed
1 year ago
1
h5ad output only contains highly variable genes
#114
fbnrst
opened
1 year ago
0
Working towards release 1.0
#113
ktrns
closed
2 years ago
1
Documentation of scrnaseq GitHub page
#112
ktrns
closed
1 year ago
0
Clean up meta data after filtering
#111
ktrns
closed
2 years ago
0
script might crash on Seurat::HTOdemux when some HTOs have very low reads
#110
fbnrst
opened
2 years ago
0
Make sure a new analysis writes into an empty results folder
#109
ktrns
opened
2 years ago
1
Reproducibility cell cycle genes
#108
ktrns
closed
2 years ago
1
Error in GenerateColours
#107
semenko
opened
2 years ago
5
Feature request: defining ground truths
#106
semenko
opened
2 years ago
4
Update README.md
#105
ktrns
closed
2 years ago
0
Text changes by Maike
#104
tglomb
closed
2 years ago
0
Missing `latent_vars` for `FindAllMarkers` if samples are integrated
#103
ktrns
closed
2 years ago
0
Small changes before release
#102
ktrns
closed
2 years ago
6
Bug exclude genes
#101
ktrns
closed
3 years ago
1
DEGs contrast in separate script
#100
kosankem
opened
3 years ago
4
pt.size
#99
kosankem
closed
2 years ago
1
UMAPs displaying samples separately
#98
kosankem
closed
2 years ago
4
Diverse cluster resolutions
#97
kosankem
closed
2 years ago
4
Downsampling of cells after filtering
#96
kosankem
closed
2 years ago
8
Tables displaying excluded cells/feature numbers with percentages
#95
kosankem
closed
2 years ago
1
Future multicore vs multisession
#94
andpet0101
opened
3 years ago
0
Updated HTO script
#93
ktrns
closed
3 years ago
0
Prerelease1 start with parameters
#92
tglomb
closed
2 years ago
5
Prerelease1 start with parameters
#91
tglomb
closed
3 years ago
1
Prerelease1 andpet
#90
andpet0101
closed
3 years ago
2
Script checks if biomaRt is available even though the annotation file is provided
#89
ktrns
closed
3 years ago
0
Excluding genes only if they are to be excluded in all samples
#88
ktrns
closed
3 years ago
0
Spatial Transcriptomics
#87
ktrns
closed
2 years ago
1
Automatization of script execution/Start script from command line with parameters
#86
tglomb
closed
2 years ago
1
Fixed a few small bugs, and updated output part.
#85
ktrns
closed
3 years ago
0
Plot updates
#84
ktrns
closed
3 years ago
1
Prerelease1 andpet first PR
#83
andpet0101
closed
3 years ago
1
Loupe export with hashtags
#82
andpet0101
closed
3 years ago
0
add export to h5ad for interactive visualisation with cellxgene
#81
fbnrst
closed
3 years ago
0
Output files for differentially expressed genes
#80
ktrns
closed
3 years ago
1
No encoding supplied: defaulting to UTF-8
#79
andpet0101
closed
3 years ago
0
Move additional small analyses into separate folder
#78
ktrns
closed
3 years ago
1
Integrate additional data in sc object
#77
andpet0101
closed
3 years ago
0
Bugfixes
#76
ktrns
closed
3 years ago
1
How to run the workflow on a cluster
#75
ktrns
closed
3 years ago
1
Improve output
#74
ktrns
closed
3 years ago
1
Singularity container
#73
ktrns
closed
2 years ago
1
Sort parameter chunk
#72
ktrns
closed
3 years ago
0
Prefix for metadata
#71
ktrns
closed
3 years ago
1
10x datasets with multiple samples
#70
andpet0101
closed
3 years ago
0
Single sample input
#69
tglomb
closed
3 years ago
4
Update of the HTO skript
#68
andpet0101
closed
3 years ago
0
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