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Hello.
When running RoseTTAFold-All-Atom using the following input YAML config file, I observed that the inference code returned a `.pdb` file that contains a predicted protein structure with the f…
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> Convolutional neural networks (CNNs) have been shown to perform exceptionally well in a variety of tasks, including biological sequence classification. Available implementations, however, are usuall…
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**Description**
**Sub-lineage of:** KP.3
**Earliest sequence:** 2024-3-9, Tasmania — EPI_ISL_19140364
**Most recent sequence:** 2024-6-16, Canada, Alberta — EPI_ISL_19222338
**Continents circulati…
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### [Transcription factors](https://www.youtube.com/watch?v=Sd3imcsvXxI)
1. Transcription factor (proteins) control the expression of genes by regulating the process of gene transcription.
![gene-…
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https://doi.org/10.1101/137828
> Understanding the relationship between protein structure and function is a fundamental problem in protein science. Given a protein of unknown function, fast identif…
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## 2. New data formats
The most energy and creativity for machine learning projects is on organizing the data, optimizing the data structures, and extracting features. That being said, the current …
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I've repeatedly encountered motif discovery failing in Round 2 with a NaN or value too high exception.
To isolate, I've tried several models with different layers and layer structures fitted and s…
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### **Description** Transferred from https://github.com/sars-cov-2-variants/lineage-proposals/issues/1594
**Sub-lineage of:** KP.2.3 (= JN.1 + S:∆S31, S:H146Q, S:R346T, F456L, V1104L + ORF3a:K67N + O…
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Hello! Not much of an issue, but it isn't clear to me in the README.md if SONiCS can deal with complex repetition structures like compound motifs (such as TG(2)TC(1)TG(16), for example). I'm dealing w…
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Hello,
Thank you for creating this tool, it's been very easy to get using following the documentation. Would you be able to write a bit on how best to interpret and use the prediction results? In …