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Hello,
I am currently conducting single-cell proteomics experiments because our sample signals are much weaker compared to conventional DIA. I was wondering if DIA-NN has a similar way to adjust si…
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https://benjaminmount.github.io/2024/08/22/Study-Notes-Genomics/
0 Preface基因组学包括转录组学(Transcriptomics)、蛋白质组学(Proteomics)、表观基因组学(Epigenomics)、宏基因组学(Metagenomics)、群体基因组学(Population Genomics)、进化基因组学(Ev…
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Cite the new [scp workflow](https://arxiv.org/abs/2310.13598) in the vignette.
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- [ ] [Correlated gene modules uncovered by high-precision single-cell transcriptomics](https://www.pnas.org/doi/abs/10.1073/pnas.2206938119)
- [x] [Dynamics of single-cell protein covariation during…
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Dear Suoqin,
I would like to ask you a question:Why haven't we utilized single-cell proteomics for cell communication recognition and prediction? Isn't protein a more direct reflection of the final p…
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Would it be possible to implement a function that can plot (for a given gene set) a GSEA plot similar to the one here:
[https://yulab-smu.top/biomedical-knowledge-mining-book/enrichplot.html#runnin…
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Dear Sabrina, @SabrinaRichter
Thanks for your research and your contribution to the single-cell proteomic data. I am very interested in the data mentioned in your article. I am a PhD student and I …
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For large data such single-cell proteomics data, the robust summary aggregation is very slow. You can test this with this example:
```r
library(scpdata)
library(scp)
aggregateFeatures(specht2019…
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Is there any reason to restrict the scope of this project to "neuroscience" ? Couldn't we think about life science in general?
Especially when one consider that neuroscientists sometimes also do me…
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Relates to "per-host configuration" of Galaxy: https://github.com/galaxyproject/galaxy/pull/12328
**Galaxy Version and/or server at which you observed the bug**
Galaxy Version: 23.2.1.dev0 https:/…