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I am loading Trust4_report.tsv file using repLoad from immunarch with no error. But the error happens when I try the following:
I subset the original Trust4_report.tsv file into separate TCR and …
Sa753 updated
3 weeks ago
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Dear authors, congratulations on your very nice work!
I have one problem.
Could I use the TULIP model to compare the binding strength of different peptides (such as random peptides) given a fix…
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For the `gliph-group-discovery` command, an option can be supplied as outlined in the documenation with the following example: `--refdb=mouseDB.fa`.
However, there is no example file provided on w…
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Hi @kmayerb,
I came across a case, where two TCRs differ by an A to P change in their CDR3, but their distance is 0. How come?
```python
>>> import pandas as pd
>>> from tcrdist.repertoire imp…
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This would be one way to integrate consideration of TCR repertoire data. If a user has TCR data from TILs say, they could use TCRMatch to further prioritize candidates where TCRMatch reports a hit in…
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Hi:
Thanks for the package uploaded. I would like to learn whether it is possible to return the weight of each sequence (Then we know which sequences play an important role in our sample level pred…
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Hi all,
Thanks for developing this very interesting and useful package.
Am I correct in assuming there is no compatibility with demultiplexing cell hash data with TCR repertoire analysis (10x) …
CAC13 updated
2 years ago
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## Bug report
### Expected behavior and actual behavior
I have a subworkflow that I'm importing two times and invoking like this:
```nextflow
include { ANNOTATE as ANNOTATE_BCR } from '../s…
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Hi, can immunarch read in repertoire data that has been outputted from the CLC Workbench from Qiagen (https://digitalinsights.qiagen.com/products-overview/discovery-insights-portfolio/analysis-and-vis…
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## 🐛 Bug
- **10X Cellranger:**
Chemistry Single Cell V(D)J R2-only
V(D)J Reference vdj_GRCm38_alts_ensembl-4.0.0
Pipeline Version cellranger-5.0.1
- **R-4.2.0 and package installatio…