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Hi, I notice that you utilize builtin DDIM scheduler in inference, however, the discretization of it is different with that used in training stage.
Specifically, the endpoints that split time inter…
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Please notice the mistake in the last line of the attached code below. This is taken from the inference.py file in the ~/Chronocell/ directory. I think it needs to be changed to import_module("Chronoc…
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There's "a bunch of" methods out there, I wasn't aware of that.
![2018-12-11_09 32 03_1288x949](https://user-images.githubusercontent.com/7051479/49787737-c37b7500-fd27-11e8-8ec3-8a12ed9b0d9a.png)…
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Hello
Is it possible to run trajectory inference of Asc-seurat with R program created (not Asc-seurat created) rds files?
How long can I expect to finish inference for large integrated ads files?
T…
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Many thanks for your amazing work!
I would like to know could you please share the code that you determine the trajectory same as in your paper.
It seems like you use the predetermined selected poin…
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Dear authors,
I have read with interest the preprint that links to this Github repo, "Trajectory inference from single-cell genomics data with a process time model".
The preprint mentions the "…
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Thanks for your inspiring work!
I find the param (s_w/s_h/e_w/e_h and ps_w/ps_h ...) are specified in script. How can I obtain these trajectory when inference on my own video if I want to keep the m…
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Hello !
I'm performing a multivelo analysis on a complex tissue with more than 10 well-represented cell types. When I perform the analysis on the whole sample, it work just fine.
However, I'm mainly…
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I'm new to dynverse and I am trying to run my first trajectory analysis.
I created my dataset from a seurat object as followed:
```
dataset
SebRW updated
3 years ago
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```Traceback (most recent call last):
File "/code/run.py", line 52, in
mute = True
File "/pCreode/pcreode/functions.py", line 698, in pCreode
hi_pl, hi_pl_ind = hierarchical_placement…