-
https://github.com/pombase/website/issues/949
We would like to be able to download tabulated annotation from gene pages.. Because we can.
-
Hi @zhanxw,
Is it possible to specify specific variants in each group (for example epacts format like), other than just specify by range? It's better to have chr:pos:ref:alt like format to have th…
-
Hello,
I want to call allele chromatin loops. Does FAN-C call allele chromatin loops?
Best,
-
instead of downstream in the counts subworkflow
Homozygotes aren't useful in allele-specific analyses, so we discard them in the _counts_ subworkflow. But discarding them upstream, even before runn…
-
HiFiCNV currently outputs `0/1` as a placeholder GT value for all cases. Set policy to either make this unknown or provide a consistent interpretation of copy number as GT.
ctsa updated
10 months ago
-
Hi.
I've run DoAbsolute utilizing the example data. Here present the code.
```
example_path = system.file("extdata", package = "DoAbsolute", mustWork = T)
# segmentation file
seg_normal = fi…
-
So we can change allele freq in the founders (not setting to 0.5 and not estimating from the data)
-
Hey,
It would be neat to be able to run isovar on many .bam samples to see how allele-specific expression changes with treatments/time. The specific use-case I have in mind is the change in expres…
-
The current definition of 'variant collection' in SO is “a sequence collection comprised of one or more sequences of an individual”.
A. It is not clear what is meant by ‘of an individual’ . . . this s…
-
Currently, the [mutators](https://github.com/kipoi/kipoi/blob/master/kipoi/postprocessing/variant_effects/utils/mutators.py) accepts pandas arrays as arguments for the `__call__` method:
```python
…