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Hi Christopher,
Thanks for putting iGUIDE together. This is great. While trying to install it has some issues creating the 'iguide' environment. See the screenshot attached. I'm looking forward to…
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Dear @readmanchiu
I am currently using Straglr 1.5.0 and produced the following output for the FGF14 locus. If I am correct there is a discrepancy in the sequence shown in the vcf and the AL/ALR a…
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(fcb-bioimage)=
# bioimage-deposition
````{panels_fairplus}
:identifier_text: FCBxxx
:identifier_link: 'https://w3id.org/faircookbook/FCBxxx'
:difficulty_level: 3
:recipe_type: applied_examp…
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https://mp.weixin.qq.com/s/jldxPNo_ofeNlfx26TqnoQ
ixxmu updated
3 months ago
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Hi authors,
My studied organism is _Schizosaccharomyces pombe_ . The latest GFF annotation file is from the Pombase website, not from Ensembl. So I construct the TxDb object by giving the GFF fil…
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In case it's helpful, I think some of the documentation on Prime editing parameters could be clarified. Do let me know if it's all confusion on my side, it may very well be!
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`--prime_editing…
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Hi JP and team, I'm trying to make a new `CrisprNuclease` object based on an enzyme that has been shown to have a more permissive pam sequence, which I initially tried to encode by specifying more pam…
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The Validation Lab is ready to share Breast Cancer data with us for integration into PPP.
The dataset adds a number of additional data points to the colorectal one (currently in PPP)-such as three d…
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*SingleCellPrediction should instead be labled Perturb-based prediction task for scperturb datasets
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I ran CRISPRESSO2 using on a CRISPR/Cas9 edited loci, while the "Allele plots" shows several INDELs, the "Allele_frequency_table" does not reflect the same INDELs and recognize the INDELs as "TRUE" fo…