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Hi Gao,
I tried to retrieve the repeated subunits from the long read and feed it into other consensus calling methods (such as Medaka by ONT or majority voting).
According to the README:
subPos:…
zztin updated
4 years ago
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At multiple locations in the design the list of elements of the same type gets mixed with the elements of other types:
- list of _consensus-sequence-block_ elements is just next to the element _refere…
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Hi Hajime,
Just curious, is minialign alignment accurate enough for Quiver genomic consensus corrections? Or do you have any other suggestions on sequence consensus corrections?
Thanks,
JW
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This file was a dummy example run that only allowed 10 successfully-mapped reads (so pretty much all positions are coverage 0, with some coverage 1), and the `test.low_depth.tsv` file is fine (it says…
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It would be great to have the option to create a consensus sequence from an alignment (perhaps a setting to adjust the cut-off frequency), and have this sequence added to the alignment.
Essentially a…
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I was recently trying to reproduce the result of a 2014 paper in which they used repeatmodeler to identify repeats in a non model organism. They had 398 consensus sequences from repeatmodeler. However…
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Hello, I am using HiTE to annotate transposons. However, I did not provide a database such as repbase. I found that the values of the matching repeat columns in the results seemed to be randomly gener…
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Hello, During the rule_reformat_filter_clusters step, only 36% of the clusters are being written, and I am not sure why. I understand this is happening in parse_clusters.py but have not been able to i…
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**Describe the issue**
RepeatMaskerLib.embl is not built while configuring RepeatMasker-4.1.2-p1 and is requestrd by DateRepeats
```
rpm_maker:RepeatMasker/RepeatMasker-4.1.2-p1 > DateRepeats
I…
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E-mail request from Richard H. Put this flag in the sample header of the consensus sequence download file? Which kind of insertions: relative to coordinate reference, relative to consensus, or both?