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**Describe the bug**
It seems like neat processes regions in the reference that I did not explicitly include in the target bed file. I want to simulate reads for some cancer related genes using the…
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I'm trying to run the vignette and this error appears, below is my command and the issue
```
bash /home/dani/software/ExplorATE_shell_script/ExplorATE mo -p8 -b /usr/bin/bedtools -s /usr/bin/salm…
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Small glitch, I think:
When I first load a genome browser with a bed annotation file and try to search for a gene, the gene isn't found.
If I zoom-in and zoom back out, the search works as-expec…
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Running Candida_albicans genome UCSC chrom.sizes to get the url did not yield any result to be used. How can I use this tool for a yeast genome not on ucsc browser?
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### Main steps for adding new genome and annotation collections
# Genus/species/collection names:
- Phaseolus/coccineus/genomes/PHA8298.gnm1.PYJ1
- Phaseolus/coccineus/annotations/PHA8298.gnm1.…
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### Main steps for adding new genome and annotation collections
# Genus/species/collection names:
- Glycine/max/genomes/Wm82_NJAU.gnm1.N4GV
- Glycine/max/annotations/Wm82_NJAU.gnm1.ann1.KM71
…
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**Is your feature request related to a problem? Please describe.**
The [gff2json.py]( https://github.com/cidgoh/nf-ncov-voc/blob/master/bin/gff2json.py ) script requires a dictionary file. This is a …
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Several users would really like to have functionality similar to the UCSC genome browser's Track Hub:
https://genome.ucsc.edu/goldenpath/help/hgTrackHubHelp.html#Intro
Is such a thing likely/possibl…
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hello,
Thank you for developing this tool！
I had some problems when building my Genome browser, I wanted to create multiple tracks of the same type, such as bw files, but when adding tracks on the w…
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Hi ,
I have a normal and tumor bam file from patient sample.I would like to view the micro satellites in the sample.I tried scanning reference genome hg38 and hg19 from ucsc genome browser.
I can cr…