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## Bug report
### Expected behavior and actual behavior
Hello, hope you are doing well!
I expected to be able to run `nf-core/rnaseq` using AWS Batch. We created a the first two CloudForma…
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quilt+s3://quilt-ernest-staging?Name=quilt&Owner=Kevin+Moore&Date=2023-03-07&Type=CRISPR&Notebook+URL=http%3A%2F%2Fexample.com#package=test/hurdat&path=.
./launch.sh run ./main.nf -profile standard -…
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Hi, I was running NOMAD on two fastq.gz files to identify the variation between the two. I run:
`nextflow run salzmanlab/nomad -profile conda -r main -latest -resume --input sheet.csv --element_annot…
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Grandeur finished with errors (see attached): 1.) ValueError - only 1 label for 39 samples; 2). snp matrices were all 0's.
[End of Grandeur TB nextflow log.txt](https://github.com/UPHL-BioNGS/Gran…
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I'm attempting to run `./gradlew :app:dependencyCheckAnalyze` using 9.0.2, and I'm getting:
```
> Task :app:dependencyCheckAnalyze FAILED
FAILURE: Build failed with an exception.
* What went…
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## Bug report
Using nextflow with charliecloud.enabled=true with a shared `cacheDir` on a HPC
### Expected behavior and actual behavior
By default the `ch-run` command uses the result of `ma…
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## Bug report
### Expected behavior and actual behavior
Having some issue with `nextflow self-update`, I tried to de-install and re-install nextflow. I first remove the `nextflow` binary, then …
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## Bug report
### Expected behavior and actual behavior
I expect that `file(read).getName()` returns the value of `read`, but it sometimes returns the next value in the channel.
It returns for…
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### What happened?
First off thank you for this great program