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The first query works:
```
`$ q -H -d"," "SELECT * FROM JGI_strains.csv WHERE Platform='Illumina'"
1,Hernandeziana,sp.,ATA11-4-KO1,Illumina
2,Aetokthonos,hydrillicola,B3-Florida,Il…
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#### Are you using the latest version of [samtools]
samtools 1.19
#### Please describe your environment.
-Linux 6.5.0-35-generic
-x86_64
-gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
#### Plea…
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I have Illumina novaseq, pair ended reads and I want to trim the non-internal adaptors from both ends. The adaptors I used for library praparation are NEB next adaptors for illumina. So I executed the…
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Thanks for providing and maintaining HASLR. Is it possible to use HASLR to assembly sequences from pacbio, nanopore, and Illumina all together at the same time? I have used HASLR to assembly pacbio …
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I have assembled for a genome a "suspected" highly hetrozygous genome using hifi.
The assembled genome size is 8.2G, which gives following BUSCO results.
Could you please help me understand how t…
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Hello,
I am preparing the short read data with these two scripts, and I wonder if you have some guidelines to help the choice.
I am assembling a 5 Gb genome, I have about 30x cov of 1x260 bp reads…
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### Description of the bug
The pipeline ends with error with ~120 samples:
` A USER ERROR has occurred: Bad input: Filtering removed all intervals. Select less strict filtering criteria.
`
H…
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### Description of bug
(bio) zhisong@zhisongs-MacBook-Air spades % bin/spades.py -s ../accuvirnew/bad_nano/hiv_50_2k.fastq -o testfasta --isolate
== Error == /Users/zhisong/Desktop/accuvirnew/b…
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editor preferred term: Illumina MiSeq Dx
alternative terms: MiSeq Dx
textual definition: The first FDA-cleared next-generation sequencing system for in vitro diagnostic use.
definition source for t…
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editor preferred term: Illumina MiSeq FGx
alternative terms: MiSeq FGx
textual definition: First fully validated sequencing system for forensic genomics (FGx).
definition source for the textual def…