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For the [datasets in the DDE](https://data-staging.niaid.nih.gov/portal/wip/?from=1&filters=includedInDataCatalog.name%3A%28%22Data+Discovery+Engine%22%29&q=), I get different answers than what's in t…
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Hi,
I am interested in running COSMOS with transcriptomics and phosphoproteomics data and I was wondering about the following:
1 - In the original use case of COSMOS, the PKN required a specific f…
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https://mp.weixin.qq.com/s/i0Due-eMqa8mrSn5izuQXw
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Hello Jean & team,
I have 10x Visium Spatially resolved RNA seq dataset analyzed with Seurat and would like to try Meringue to compute spatial correlation test across spatial spots with cell type …
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https://mp.weixin.qq.com/s/63LCc5IdRyXlVGyvA9Y9FQ
ixxmu updated
2 years ago
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Hi, I was wondering what would be the minimum number of reads that a FASTQ file should have to be included and used in your pipeline, and if this number should be less stringent in meta-transcriptomic…
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Hello
Thank you so much for software
I am getting this error in the last line of the code
I dob't know how to solve this
```
> repDiversity(immdata$data) %>% vis(.by = "Status", .met…
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We expect two test sets for this data (one large and one small). Need to run each through the pipeline, capturing the input AND the output data for each step. Define the file type and the method by w…
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https://mp.weixin.qq.com/s/vDPc8tsPcEy5b3j-cPLtIQ
ixxmu updated
2 years ago
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Hi all,
I'm new to using CellphoneDB and have been encountering issues when running the command "cellphonedb method statistical_analysis --counts-data=hgnc_symbol d197_kidney_meta.txt d197_kidney_n…