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Hello,
I'm trying to run centrifuge on a computer cluster, and it's failing with the message "(ERR): centrifuge-class died with signal 11 (SEGV) (core dumped)"
When I step through in the perl d…
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Hello,
I would like to use this software to determine the switch-error in a tetraploid haploid-resolved genome assembly.
I'm trying to run '[Identify signatures between the two haplotypes in ALLHi…
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#### Summary:
This exists for one subcommand (`--download`), but would be more generally useful (I think).
#### Description:
Currently, I want to see the specific `ANIm` commands that *would* b…
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I have run pyani, without specifying the --graphics option, which led to me not having a graphical output to my analysis. I dont want to rerun the whole analysis, but only generate the graophical outp…
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Hi,
ariba was running into weird issue while running on vf database:
[E::hts_idx_push] Unsorted positions on sequence # 1: 109 followed by 11
OSError: building of index for /scratch/shadow/tmpr7w…
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Hi,
When I try to run quickmerge using assembly A as reference (Illumina assembly ~746MB) and assembly B (nanopore assembly ~846MB) as query, it works fine.
However, when I switch assembly A as…
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It takes five days to run filter.delta and nothing happened when I used option delta-filter -1. My out.delta file size is about 2Gb. I'd like to if this is normal and how much time it will take?
my …
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When I type "./nucmer -h" I can see the definition of the options as following.
--mum Use anchor matches that are unique in both the reference and query (false)
--ma…
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The scaffolding stage does not always succeed for diverse genomes such as HIV or influenza.
The parameter space of the involved tools (currently `nucmer`, part of [`MUMmer`](http://mummer.sourceforge…
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Is there support for Python3.7+? I am trying to install ariba into my conda environment following the guide on [this page](https://anaconda.org/bioconda/ariba). I tried using the first command there w…