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**Describe the question or problem**
Is there anything known about sensitivity issues for HCD / Asp-N workflows?
**Details**
Dear MSGF+ developers,
I am currently analysing a batch of samples,…
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Hi,
I am using standalone version for novel peptide identification/validation and I could identify the presence the novel peptide with 'yes' in the 'confident' column (I am with no experience in MS…
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Hello,
I posted about this issue in the #438 but wasn't able to duplicate it reliably. I've encountered it again and have been able to duplicate it consistently on different machines (even with re-…
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Hello,
I have an issue with the FASTA format. It is a FASTA format which was made from the Illumina Sequencing and annotated with KREGG. We have tried a first time wihtout Uniprot annotation and i…
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I have been trying the 2. Variant peptide identification step with my own data and I keep getting the error that bioconductor is not updated which I already have along with R.
When I check R, it ru…
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This is a follow-up to one important aspect of #5323 (on Ubuntu 20.04):
> Intermittently, the "Save File" dialog will freeze up completely.
The freeze is triggered by trying to interact with the f…
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> What steps will reproduce the problem?
The loading of the searchGUI output into peptideShaker
> What is the expected output? What do you see instead?
I was expecting the window of PeptideShaker…
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Dear pFind team,
I am currently trying to run pFind, but the software GUI crashes right after starting the Data Extraction task. I attached a screenshot of the crash report.
It is in german, but th…
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Hi,
Biored ran efficiently, thank you for your help. I have one more favor to ask. How can I perform Named Entity Recognition (NER) and linking in the format required by BioRED for relation predict…
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Hi all,
Sean pointed out to me that the current mzid specifications appear to rule out
the coding of de novo approaches. When we made the transition from mzid 1.0 to
1.1, we made PeptideEvidenc…