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Hello,
Thanks for creating this software. We're interest in generating conformers from a directory of folded proteins. How can we do this?
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Reem from Georgetown University has N-glycosylation data for Sulf1 (ID: Q8IWU6) and Sulf2 (Id: Q8IWU5) proteins from paper N-glycosylation occupancy of Sulf2 in an over-expression system (PMID: 370524…
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decreased protein modification
and
decreased level of ubiquitinated protein in cell (FYPO:0005226)
These are two separate branches.
I see the rationale but it might make sense to have one branch…
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Dear team
I ran following command,
funannotate annotate -i ../10mAF_1/predict_results/ -o ../10mAF_fun/ --rename 10mAF_rename_ncbi.txt --annotations 10mAF_annotations.txt --eggnog 10mAF_eggnog.txt
…
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Basically my question is: Can perses handle mutation predictions in complexes that involve a cofactor/ligand bound in one chain?
I have a system involving the study of Protein:Protein complex, usin…
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Hi, thanks for your great work. I have a general question about benchmarking the clustering performances of different methods.
In you figure 3 (also 4), you considered Moran's I score as a me…
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Hello,
I am encountering an issue when using molpc2 to predict the structure of large proteins with known stoichiometry information. For example, when I try to predict the structure of 1A8R (or 5BSE)…
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Update ProteinMetadata so that each Feature has a unique label.
i.e. - if there are multiple Features labeled "Disordered", they would become "Disordered_1", "Disordered_2", etc.
Definition of D…
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The string_ensembl_uniprot_map.pkl dict is mapping Ensembl ids to Uniprot record name. But it should map to Uniprot accession instead.
Thanks!
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**The problem**
Gene info, including PDB ids comes from https://mygene.info. But for some genes PDB has multiple ids. I.e. for STAT3 mygene.info returns:
[5AX3](https://www.rcsb.org/structure/5AX3) …