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Dear authors,
I am attempting to run the entire [viral identification SOP](https://www.protocols.io/view/viral-sequence-identification-sop-with-virsorter2-bwm5pc86?step=1) on the test dataset.
I…
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Implement rRNA prediction on contigs
cc @jgolob
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Dear developers,
For my analysis, I'm trying to disentangle what happens to the rRNAs (and tRNAs) that have been identified in the first steps. I see that in the intermediate folder, there is a mas…
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I found the abundance ASV performed difference significant when you normalized by marker gene copies(After this step, ASVs show a difference in each sample.). Likewise, it would perform a big differe…
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Hello,
I went through the whole pipeline of funannotate and was able to obtain the Json file. The file output is :
{
"assembly": {
"num_contigs": 9557,
"length": 994064042…
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Hi,
Thanks you guys in advance!
I met a couple of questions of the PICRUSt2 (hopefully not stupid), could you please give me some clue if you're free?
(1) When preforming PICRUSt2 in Qiime2, …
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I found a patent sequence (FV537213.1) in cov2.fa which is obviously non-biological (no Cs!) and causes problems for sequence search and comparison algorithms because it is low complexity. Perhaps we …
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**Is the bug primarily related to salmon (bulk mode) or alevin (single-cell mode)?**
It is in alevin, single-cell mode
**Describe the bug**
The log shows that there are at least 50% percent reads…
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Hi,
I am using Alevin to process some 10x v2 data.
```bash
salmon -v
salmon 0.12.0
```
when not providing whitelist the mapping rate is low 20%, and many reads are discarded because of the no…
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Dear Remi,
I'm using your MitoFinder for annotation of termite mitochondrial genomes and I'm super-satisfied. With a large reference database of termite mtGenomes it outperforms in my hands both Mito…