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Hello @RubD @andrewdchen,
Does Giotto have any option to run normalization across multiple integrated samples (not individually) to minimize background noise and allow reasonable comparisons?
Seu…
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Thank you for sharing this interesting project! I was looking to install to run from our local server for a lab installation and when I try to start the server after install, it immediately throws an …
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### Description of feature
As discussed in the Slack Channel for scrna-seq on 23rd September 2022:
It will be good to allow --expect-cells in the run with --aligner cellranger option for scrnaseq …
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Partial previous wrangling in #163
New ticket created for clean track down of wrangling with current template.
### Project short name:
EmbryonicHindlimb
### Primary Wrangler:
Arsenios
### Seco…
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请问把相关的文件(如:pathway,chrom_LD等)替换成动物的,是否就可以用这个软件在动物上进行gwas和单细胞的整合分析?
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hello, I'm using cell2cell to identify interactions with scRNAseq data.
```
interactions = c2c.analysis.SingleCellInteractions(rnaseq_data=rnaseq,
…
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Hello CL Team,
Based on this paper PMID: 30787436 (2019)
https://pubmed.ncbi.nlm.nih.gov/30787436/
"A single-cell molecular map of mouse gastrulation and early organogenesis"
and Table 4. http…
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**From:** Mauricio Saenz
**Email:** mauricio.saenz-roldan@pasteur.fr
**Server IP:** 10.142.0.16
**Msg:** Hello,
I would like to use the datasets of scRNAseq to compare the expression of a group of…
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Excellent work! I noticed that CARD requires the selection of informative genes for each cell type before proceeding with deconvolution. Therefore, I would like to know which genes are identified as i…
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### Description of feature
As per suggestion of @Zethson , it would be great to add a Mermaid graph to the readme to help users out who might want to do analysis of various types with the pipeline, e…