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Researchers need to be aware of which data are single-cell vs single-nucleus so that they can take special care to ensure proper integration.
Most contributors don't provide it automatically because …
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Example: https://mila.quebec/en/publications/
It would be nice to reuse the same code as in the Mila website. Not sure if that's 'easily' possible via RTD
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Dear authors/developers,
I am attempting to perform differential expression analysis with multiple methods. All of the methods work without any issue, except for DESeq2 which produces the following…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/mrbakhsh/deepCE
Confirm the following by editing …
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Hello,
As an action of the Oct 2017 GOC meeting, ECO has create evidence codes for HTP experiments.
We ( @hatrill and the HTP working group) will provide annotation guidelines; once these are …
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**Describe the bug**
Hello,
I'm trying to generate a spectral library from Thermo DDA runs. I'm running FragPipe in headless mode in Linux with a workflow copied from the GUI to include spectral l…
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Hello,
when running FragPipe in headless mode (analyzing a TMT experiment), I get weird TMT channel names. I put an example here: https://oc.embl.de/index.php/s/9iEiAtMw6j0hSMK
In the annotatio…
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**Describe the bug**
ProgressReportNumber in the Milestone Tracker is not showing milestones 3 and above for some studies.
**To Reproduce**
Steps to reproduce the behavior:
1. Go to projectLive-…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/cytolab/cytoMEM
Confirm the following by editing …
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### Abstract
Mass spectrometry (MS)-based single-cell proteomics (SCP) is an emerging field that requires a dedicated computational environment. `QFeatures` along with its extension `scp` allow for s…