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@TrStans606
(for de-novo telomere discovery)
Test data:
ERR2061611 through ERR2061624 and ERR2188722 through ERR21887226 are available from the European Nucleotide Archive.
The rest should be a…
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Dear prof. Heng Li,
Thank you so much for the tool! I have been using hifiasm since 2021, and am a big fan of it. I recently run into different results from different versions of hifiasm, and would…
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I would like some help understanding why `rsem-gff3-to-gtff` is failing.
When I run
```bash
rsem-gff3-to-gtf data/yeast/GCF_000146045.2_R64_genomic.gff output
```
then I get the error mess…
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Hi @santiago-es - thank you making this software available. I enjoyed the paper and would like to use your Telometer software.
I don't have ONT reads, but based on the README, I would just align with…
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TSVs produced of windowed pi for Dmel and Dsim do not use "X", "2L", "2R", "3L", and "3R" for their scaffold name columns, so they are filtered out in R. The issue is different for Dsim than Dmel, si…
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- will map terms from [oba-efo-unreviewed.dosdp.tsv](https://github.com/obophenotype/bio-attribute-ontology/blob/master/src/mappings/oba-efo-unreviewed.dosdp.tsv)
- filtered by **quality_labels**: _m…
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Thanks for the wonderful tool!
Given the great improvement made to ONT duplex reads, I'm wondering if hifiasm can also be adapted to assemble duplex reads by changing some parameters? If it can, wha…
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http://api.geneontology.org/api/search/entity/autocomplete/GO:0070996?rows=20&prefix=GO
![image](https://user-images.githubusercontent.com/751274/57338437-370c8d00-70e2-11e9-8581-2be69d3f24a7.png…
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Dear autor:
I am assembling a plant genome, and now it is assembled to the level without gap. It have 21 chromosomes, but so far only 39 have been counted, and there are 3 motifs (AAACCCT) w…
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Hi,
For some samples I get an estimated length of 0. What they all have in common is that F2a is negative (i.e. F4 > F2, because F2a = F2 - F4). Here's an example:
Sample,F1,F2,F4,Psi,Insert_m…
kgori updated
2 years ago