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Hi,
TL;DR: Would it be possible to have `pairwiseAlignment` return the traceback matrix?
I am interested in doing global-local alignments between pattern string A and a set of subject strings B…
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link: https://arxiv.org/abs/1602.06725
So called VIMCO.
Referenced from:
- Learning Hard Alignments in Variational Inference #329
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link: https://arxiv.org/abs/1402.0030
So called NVIL.
Referenced from:
- Learning Hard Alignments in Variational Inference #329
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Hi,
I was using miniprot to align one protein in Sorghum to maize genome, but no matter how I changed the parameters, only one alignment was returned. But if I used tblastn with default parameter, …
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Hi,
For very bad alignments with a lot of gaps, is it possible to fill them using the reference instead N's?
Thanks!
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Add a proper styling and alignments to the view all button .Make it more responsive
![image](https://user-images.githubusercontent.com/81355585/157297605-3b723778-aa61-4944-8566-ca150d6dae04.png)
…
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Hello, I keep having this error when I try to run the pipeline:
```
Traceback (most recent call last):
File "/home/miniconda3/envs/viper/bin/viper_cluster.py", line 21, in
from viper_clus…
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If alignments or trees are too large, the scroll panel may have difficulty to move the view by scrolling bars. Add checkbox to show them or not.
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Do the authors have any recommendations for a tool to generate fast bacterial genome alignments that can be input to snp-sites?
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Greetings,
I've noticed that alignments break over small deletions. Is there a way to control the size of deletion an alignment can contain?
Thank you,
Zev
zeeev updated
7 years ago