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#### Summary:
There seems to be a problem with `pyani anim`
#### Description:
When running `pyani anim --scheduler SGE -i . -o genomes_ANIm` on my collection of ~2k genomes, I get an AttributeE…
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This tool looks interesting. I was wondering if it can be adapted for use on bacterial metagenome-assembled-genomes (MAGs)? If so, what would be the ideal genome completeness required to predict OGT f…
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Hello,
I have a problem with the output generated by simulator.py for genome option. The script results in two fastq outputs which are so called aligned and unaligned fastq files (also the associat…
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**Submitting author:** @althonos (Martin Larralde)
**Repository:** https://github.com/althonos/pyrodigal/
**Branch with paper.md** (empty if default branch): paper
**Version:** v1.0.0
**Editor:** @mik…
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Hi,
Thanks again for your work on MetaCache. I have noticed something a bit strange with the new version (MetaCache 2.0) where database loading takes much longer than I would expect (without any si…
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## Version of Integron_Finder: 1.5.1
### OS
- [ ] Linux
- [x] Windows
- [ ] Mac
## Expected behavior
I am using IntegronFinder via GalaxyPasteur website portal in Google Chrome. Until to…
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Hi,
I run wengan via docker with command:
```
docker run -it -v $PWD:/data adigenova/wengan:v0.2 \
perl /wengan/wengan-v0.2-bin-Linux/wengan.pl \
-x pacraw \
-a M \
-s /data/r1.fq.gz,/data…
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Any plans on creating a reference database of bacteria and archaea?
If no, can you please provide the details on how you constructed the bacterial reference database? I can't find any info on that…
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Hello!
Just a question.
What value is typically used for the ld_dist in the gwes_plot?
What do you recommend?
Best
Austin
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Hi,
I followed the steps in the documentation for initializing a database, create config file and start running atlas. Most jobs passed but rule classify failed. I tried multiple times.
The slurm…
zztin updated
3 years ago