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@jrobinso @mschatz @marcus1487
Split from #1133. Related to #1153.
This issue splits from #1133, which provides nice support for visualizing 5mC methylation (C+m in MM tag), to support other ma…
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Hello,
Is it possible to run dgenies locally and generate plots using the command line?
Kindly suggest!
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First at all, thanks for this powerful combination of tools.
How can I show soft-clipped region in the jupyter.
I need this
![image](https://github.com/igvteam/igv-notebook/assets/74112779/0…
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**Describe the bug**
Hello, I am having issues with getting agat_convert_sp_gff2gtf.pl to convert .gff files from the NCBI to .gtf files which are compatible with CellRanger.
Specifically, I am tryi…
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https://phytozome-next.jgi.doe.gov/info/Pcoccineus_v1_1
### Main steps for adding new genome and annotation collections
# Genus/species/collection names:
What are the collection types and name…
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Dear Kai,
I tried to import some peak data with the following script, however, as I tried to call `snap.tl.merge_peaks`, it threw some data type conversion error. Can you offer some help on this? …
zkcao updated
4 months ago
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Dear all,
Congratulations on the development of this pipeline, I have had great results.
Would it be possible to download an assembly to enter at the end of the pipeline and perform Antimicrobial Re…
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Hi,
I'm reinstalling cactus due to conflict in the environment.
I recompiled the `kyoto` libraries. Now what I did was
```
git clone https://github.com/ComparativeGenomicsToolkit/cactus.git
c…
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Hi Braker Team,
I am running BRAKER3 for annotating new Cannabis Haplotyes, but I am having a really low busco ~3% and only between 11,000 to 14,000 genes predicted where the expected is around 40,…
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Dear Whatshap team
Thanks for your great tool.
I've run Whatshap on a HiFi dataset. The Whatshap's output, the phased VCF file, includes several phase blocks. It seems that few of the phase block…