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the search and gather functionality is now sufficiently well laid out for us to make it work over remote connections in a nice standard way...
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Hi @rcedgar,
I ran URMAP in my benchmark on short-read aligners and noticed that, while it is very fast, it has low CPU usage (between 10% and 90%) regardless of `-threads N` with `N=1 4, 8, or 16`…
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This is a far reaching change that I would be rather conservative about. I'm happy to probe the community but maybe the ability to change the global configuration to include infinity is enough?
@op…
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**For which schema is a change/update being suggested?**
I would like to request an update the the [`imaging_targets.json`](https://github.com/HumanCellAtlas/metadata-schema/blob/master/json_schema…
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I have scaffolded an assembly using yahs and am trying to manually curate it in JBAT, but I am running into issues using juicer_tools pre. I know that this tool is not part of yahs but since I'm runni…
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Snakemake 7.8 changes its rerun behavior. Before, rerunning jobs relied purely on file modification times.
Now, also provenance information is considered, like parameter changes, code changes, softwa…
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1 - **instrument_model** can be captured with OBI device terms
Tasks:
--find existing terms for devices
--identify devices for which there are no OBI terms
--for datasets without platform_ids, s…
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Hi Kamil,
Thanks for the clear documentation and awesome tool.
I have troubles understanding my smudgeplot. I have used follwing command to generate it
```
smudgeplot.py plot kmcdb_L135_U100…
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Hello, I'm using last-train to determine the rates of insertion, deletion, and substitutions between my reads and the genome:
```
last-train -P12 -Q0 mydb 17HanZZ0034.fastq > myseq.par
```
Unf…
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I've been using minimap to map my pacbio long reads to my genome. Output is about 6 gb uncompressed
Uncompressed it gives a file size is greater than 2gb error.
```
RangeError: File size (6676642…