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Many clinical genomic projects have _researchers_ associated to study all the genome data collected. In this scenario we can identify two main big use cases:
- clinical: data from patients are being …
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I'm trying to use the mode ='r' for a regional plot with plot_mqq(). I downloaded the gtf and vcf files that are in hg38 from the gwaslab Github using gl.download_ref. However, I can't seem to get the…
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I tried the **pre** command with _juicer_tools_1.19.02.jar_, _juicer_tools.2.04.06.jar_, _juicer_tools.2.18.00.jar_, and _juicertools.2.20.00.jar_ with a genome size that is a little bigger than 2**3…
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Hello, thank you for this package.
I have 3 questions and I hope you can answer them:
- Can we use Variant Detective on reads generated using Oxford Nanopore technology (long reads)?
…
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Dear Alex,
Hello, Alex. Thank you for developing such a great tool. I've just started learning about bioinformatics, and I'm really interested using your tool to analyze various RNA-seq data.
Re…
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dear author, I used install manual in this website (https://zenodo.org/record/3697265#.XykIRigzbic) and create the backblast env by conda. but when I want to use backblast setup command, it was failed…
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Hi,
Thanks for this wonderful tool!
I get this picture with a black region in the middle.
![A_250kb_profile_4%](https://user-images.githubusercontent.com/46771339/154484387-39f5ebc5-25fa-49f6-…
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# General Information
Data and code directory on the server:
`/mnt/data/asis/prot-scriber`
_Note_ that in the following all relative paths are to be rooted in this directory.
R-Code for evalua…
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Hi, I am using Seurat version '4.3.0' and SeuratObject '5.0.1' to run Pando, but I get an error when I run find_motifs:
```
Error in validObject(.Object) :
invalid class "SeuratPlus" object: i…
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We are close to releasing our new pipeline schema which describe input parameters. Through chatting to people at BOSC 🍐 I've become aware of a project called [Bioschemas](https://bioschemas.org) which…
ewels updated
3 years ago