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Good morning,
I'm trying to run FALCON (falcon-kit 1.8.1) on a set of CCS reads, followed by unzipping and phasing with HiC data.
I'm trying to run it on a Univa GridEngine, for which I created the …
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Can hifiasm output assembly reads coverage for each utg? like
![1630829021(1)](https://user-images.githubusercontent.com/13797223/132119990-a927818b-c790-43c7-b231-f3bbfbd4635c.png)
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Hi!
So, I'm trying to use your tool in my analysis, but for the graphs I'm using, I get this error with most of them:
```
[get_blunted : 0.0 s elapsed] Reading GFA...
[get_blunted : 0.0 s elap…
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Hi I am working on a triploid species which is highly heterozygous, see genomescope plot
http://qb.cshl.edu/genomescope/genomescope2.0/analysis.php?code=nnC4CPmgLE3605rbyM7y
My data is Hifi and …
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Hi,
I am using hifiasm version 0.16.0-r369 at HIC mode, but it stops with this error. Please help me check it.
Thanks.
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Hi,
I have data from the ultra low protocol.
Then I ran IPA with the default parameters using trimmed and deduplicated HIFI reads (theoretical coverage: 50X) :
`ipa local --nthreads 20 --njobs…
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This is not an urgent issue.
For some reason my hifiasm exited 1 when doing `hifiasm --version`. We normally rely on the exit status as the "smoke test", not for critical tests.
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Hello, does hifiasm use parallel computing?
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Hi guys,
I have been running the latest squeezemeta version only using metabat for the binning (`--nomaxbin` since maxbin is sometimes very slow) and once the pipeline gets to step 16 (DAStool) it …