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Hi,
I wanted to run the Espresso for just quantification with a given annotation without any identification, but I don't know if this is possible or not. I follow the steps that is expressed in th…
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**Describe the bug**
1.The output gff file is bigger than input gff file for script agat_sp_filter_feature_by_attribute_value.pl
2.I tried to using script agat_sp_keep_longest_isoform.pl to gener…
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This was created from a conversation @ukemi and @sierra-moxon , making explicit an implicit task.
geneontology/gopreprocess#9
kltm updated
3 months ago
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During running this software, I came across this issue. Any suggestion on how to solve this? Thanks!
```
Traceback (most recent call last):
File "/Mgcod/bin/mgcod.py", line 185, in
main(s…
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### Operating System
CentOS 7
### Other Linux
_No response_
### Workflow Version
v0.6.3-gc35c0ec
### Workflow Execution
Other (please describe)
### EPI2ME Version
_No response_
### CLI comma…
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**Describe the issue:**
I am observing some weird genotypes calls, when I call variants from RNA-seq data. I've followed the nicely written tutorial, the only thing I changed was a minimum coverage o…
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Hi,
I am using psix for smart-seq2 data that is aligned using STAR. I've successfully ran psix_object.junctions2psi and psix_object.run_psix is partly working, but gets an assertionerror in line 247 …
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Hi, thank your espresso for a very friendly experience for the beginner like me. But I encountered an error when running the final Visualization.
The error section showed in two places:
`subproc…
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I was getting an error message when using a --support value below 0 for the collapse module. There was an error in the script filter_isoforms_by_proportion_of_gene_expr.py. I changed 2 lines, which fi…
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Dear,
I tested this tool with test data and it works absolutely fine. But I was not able to find these functions in IGV (2.15.2) File -> Load from File -> {sample_name}.bw for each sample
Right c…