-
I'm not sure what happened but metaSPAdes failed towards the end of my run. Do you have an idea on what might be happening?
Collapsed metaSPAdes output
```
System information:
SPAdes ver…
-
Here's my `spades.log file`:
Let me know if there is any other information you need and I will update accordingly.
```
-bash-4.1$ cat rnaspades_output/frozen/spades.log
Command line: /usr/local…
-
Hii..
Error occurs during the assembly process
```
veena@veena-Lenovo-H30-50:~/Documents/TZ/canu$ canu -correct -p xab -d xab genomeSize=150k -pacbio-raw /home/veena/Documents/TZ/Mit/Proovr…
-
Hello,
I am trying to create a gemBS index for GRCh38, specifically this fasta: https://www.encodeproject.org/files/GRCh38_no_alt_analysis_set_GCA_000001405.15/ . However, it always fails at exactl…
-
Hello Sergey:
We are having some difficulties getting canu job to dispatch on more than one node using the Grid options. I am assembling a large genome with over 100X coverage of Sequel II data.
…
-
Hello there,
Thanks for providing this tool. Do you have any way to know how much memory we would need to do the assembly for files of a particular size? I'm playing with two paired-end samples tha…
-
Hi,
I ran manual Canu correction by running the following command on SGE cluster.
```
canu -correct -p pb3 genomeSize=25m -d pb3-ont -nanopore-raw $NANOPORE_RAW \
useGrid=false \
…
-
Hi, Hyun,
I followed your instructions, but I can not move forward from the stage 'PIPITS_PROCESS'.
I am running a test with your test file, and my problem is indicated below.
- From the outp…
-
Error when running `colorid search` with k=39, and the read is less than my kmer length
-
Hello,
I would like to have the uniq parental k-mers computed by TrioCanu and their numbers. Is there a way to get these? If I understand right /haplotype/0-mercounts-haplotype1/haplotype1.ms20.onl…
bfr42 updated
5 years ago