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**Describe the bug**
I am currently using antiSMASH 5.1.2 in a cluster, I obtained 44 results from metagenomes and I wanted
I don't have expertise handling JSON files but I found you can use the …
drelo updated
3 years ago
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These buttons on the Stegen study page are clickable but don't do anything. Not sure what the original intention was?
![image](https://user-images.githubusercontent.com/7374085/108245263-ecb49e80-710…
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This issue is for documentation of the behavior of WtP for large input files. Based on this @replikation might implement FASTA chunking to increase speed of the pipeline.
### case 1, aquadiva samp…
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Do you need to create databases or is there a better option?
I created a database for copepods:
```
makeblastdb -in ../blastpacope/genomas_copepods/ncbi_dataset/data/db_all_copepods.fna -dbtype…
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## Description
I created a custom filter ('boruta.filter'), which works with `parallelStartMulticore`, but when I try to use it with `parallelStartBatchtools`, I get the following error:
```
Er…
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Hi,
I am wondering if Trycycler can be used for another kind of circular genome assembly (chloroplast) with nanopore reads?
Chloroplasts generally exist with two haplotypes in the same cell. (Sa…
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The following function works when initialized in an R session, but generates the error below when used within a package (custom, internal R package)
```
rb = function (infile, nrows = Inf, keep_fr…
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Hi,
Thanks you guys in advance!
I met a couple of questions of the PICRUSt2 (hopefully not stupid), could you please give me some clue if you're free?
(1) When preforming PICRUSt2 in Qiime2, …
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### Use Case: get amplicon data to feed into dada2
*These data are more coarse than the shotgun metagenomes, but are not pooled and occur more frequently*
---
- [x] Run through Lee Stanish's R scrip…
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Hi,
First of all, thanks a lot for this super cool pipeline!
We have isolated colonies from environment and we sequenced them. We never cultivated them. Is it possible to compare their metabolic n…