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rrwick
/
Trycycler
A tool for generating consensus long-read assemblies for bacterial genomes
GNU General Public License v3.0
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dna_r10.4.1_e8.2_400bps_sup@v5.0.0 & Trycycler &Medaka
#78
zmqstc
opened
3 weeks ago
0
Segmentation fault caused by building ME tree
#77
georgiesamaha
closed
1 month ago
2
unicycler failed --no_correct
#76
DingJingZhi
closed
4 months ago
1
polypolish need polish
#75
DingJingZhi
closed
4 months ago
1
Option for the required software path
#74
ASUQ
closed
4 months ago
3
Question about purpose of subsampling
#73
aharring83
closed
5 months ago
1
textsize deprecated in Pillow 10, causes error "'ImageDraw' object has no attribute 'textsize'" in dotplot.py
#72
erikwolfsohn
closed
6 months ago
1
Fails to build under Python 3.12
#71
mesti90
closed
6 months ago
2
Unable to install through conda (mamba)
#70
ASUQ
closed
8 months ago
3
Insert a new sequence of about 2k into my genome，it always appears in the last cluster，which cannot be found in consensus.fasta
#69
abcdot
closed
9 months ago
0
AttributeError: 'ImageDraw' object has no attribute 'textsize'
#68
noahmueller97
closed
6 months ago
1
Conda installation on Mac not working
#67
francescodc87
closed
6 months ago
2
Recommendation: LJA / La Jolla Assembler
#66
MrTomRod
closed
1 year ago
1
Subsample Issue: miniasm produces 0 bp assembly
#65
yusator
closed
1 year ago
1
Parallelization of get_pairwise_alignments
#64
danpal96
closed
1 year ago
1
trycycler reconcile: multiprocess get_pairwise_alignments
#63
danpal96
closed
1 year ago
2
trycycler reconcile: error: argument trycycler reconcile: error: argument trycycler reconcile: error: argument --min_1kbp_identity: invalid int value: '25.0'
#62
danpal96
closed
1 year ago
2
Large differences in pairwise identities
#61
ashleyp1
closed
1 year ago
1
miniasm_and_minipolish.sh
#60
sogriffin98
closed
1 year ago
1
'cannot determine trim amount'
#59
jdakota1305
closed
1 year ago
1
FileNotFoundError: [Errno 2] No such file or directory: 'minimap2'
#58
yusator
closed
1 year ago
3
I have a problem with spades.py
#57
lil-bei-bei
closed
1 year ago
1
cpu count vs available cpu :: potential overcommit
#56
EricDeveaud
closed
1 year ago
1
Using trycycler on metagenomic bins?
#55
microbemarsh
closed
1 year ago
0
How to remove empty regions in the final Trycycler-assembled bin using polishing software?
#54
wyanren
closed
1 year ago
1
Inquiry
#53
songmj86
closed
1 year ago
1
Reconcile fails when fasta files
#52
erinyoung
closed
1 year ago
1
Assembly qscore plots
#51
sarah872
closed
1 year ago
2
Too Many Clusters
#50
derekstein
closed
1 year ago
1
Please make new bug fix release to get fixes into bioconda
#49
corneliusroemer
closed
1 year ago
1
segmentation fault error
#48
steinbrl
closed
1 year ago
2
trycycler reconsile could continue evaluating contigs after one fails
#47
d4straub
opened
1 year ago
2
msa Error
#46
rowi2024
closed
1 year ago
8
Short-read question
#45
JuantonioMS
closed
1 year ago
1
Using mafft instead of muscle for MSA step?
#44
egonozer
closed
2 years ago
1
Strange clustering/a lot of clusters
#43
termithorbor
closed
1 year ago
3
muscle command in msa.py missing -threads argument
#42
marade
closed
2 years ago
1
MUSCLE failed to complete pieces; Error running MUSCLE on genome cluster during msa step
#41
menickname
closed
1 year ago
3
AssertionError during Reconcile of plasmid sequence
#40
menickname
closed
2 years ago
1
how to automatically deal circularization problem in **trycycler reconcile** step
#39
yipukangda
closed
1 year ago
2
MUSCLE version compatibility issue?
#38
fgaudilliere
closed
2 years ago
2
Trycycler should automatically save log to file
#37
clf-bio
closed
2 years ago
1
Challenges recreating demo datasets
#36
johnsonj161
closed
2 years ago
1
KeyError thrown in 'Merging MSA' step of trycycler msa
#35
AshSies
closed
2 years ago
10
should I worry about the persistent indels?
#34
fengyuchengdu
closed
2 years ago
1
Command 'raven' not found
#33
Chuangsc
closed
2 years ago
2
Running trycylcer cluster under python3.7
#32
AmyNjaaye
closed
1 year ago
1
Short and long reads come from different samples
#31
termithorbor
closed
2 years ago
1
no output after racon initial polishing round
#30
fetyj
closed
2 years ago
3
Permission Denied [13]: minimap after pip install
#29
jacobkri
closed
2 years ago
3
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