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Below we consider new names for what to date we have been calling 'Sequence-Level Variation' vs 'Post-Sequence Variation', and for what to date we have been calling 'Precise Variation' vs 'Bucket Vari…
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OWL has a handful of ["profiles"](https://www.w3.org/TR/owl2-profiles/) that specify subsets of the language. In OBO we tend to use the EL and DL profiles. The DL profile has most OWL features. The EL…
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Hello,
I have KO samples for an enzyme responsible for m6A modification, and I have identified many m6A sites in these KO samples. I am currently analysing the entire sample library to quantify m6A s…
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Hi,
I have RRBS data from 44 Lung cancer samples (Ctrl and diseases). There is high heterogeneity beside the tumor cells in the samples, that is why after pre-processing with RnBeads, I submitted the…
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Dear Dr. Hajk-Georg Drost
Recently, I used one of your programs named "LTRpred".
I keep getting this error in the Join solo LTR Copy Number Estimation table after Finished LTR CNV estimation…
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Hello,
I'm trying to import a list of files from a very simple `sample.annotation.csv` file. I've tried using it (`sample.annotation`) as part of `rnb.run.import()` as both a data.frame (specified …
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hi,
I split the rows whiling clustering, but it seems the order is completed messed up. Is there any setting to fix the split order?
Thank you!
```
cm = pch.ClusterMapPlotter(pd.DataFrame(r…
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Hello authors:
Recently i studied your work about this mRNA-miRNAs-cancer-pathways.
But there are some points i didn't understand.
1. You calculated the correlation between miRNA and its target mR…
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When initally running `gemBS extract`, I do not see any variants in the `_snps.txt.gz` files.
The gemBS config refers to the following Reference and DBSNP:
```
...
reference = ${root}/ref/huma…
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- [x] sld3 = treslin TICRR jackhammr iteration 7 (submitted to InterPRO)
- [x] Update species distribution