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Is it possible to use TOAST for microarray data? Are there modifications or specifications that should be used when analyzing microarrays?
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Fang Lab,
Unfortunately the singularity installation option wasn't working for for our campus cluster or my lab machines. As such, I had to set up a conda environment on our cluster and attemptted …
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Hello @alexg9010 . I do have an unbalanced number of replicates for my conditions. For example, one condition A has 5 replicates B - 3 and C - 4. Can methylKit handle these uneven numbers of replicat…
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Hello,
Super happy with the database that you have put together. This is an awesome resource for researchers.
So from some experiments in my lab I have a list of DMRs from DNA methylation data and…
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Hello,
I am sorry to bother you, but I'm hoping you will be able to help with a problem I am having with methylKit. More specifically, the program works well until the "unite" step. I am able to crea…
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# Issue Report
I am currently working on analyzing RNA methylation modifications using DRS data and DNA methylation modifications using ONT data. However, I have encountered several questions that I …
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Hi,
I'm currently attempting to run `reidentify-DMR` on the` DMRfind` results. However, I encountered the following message, setting --sig-cutoff to 1 doesn't change anything:
```
Begin FDR Cor…
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Hi,
I tried to install as recommended:
```
git clone --recursive `https://github.com/jts/nanopolish.git`
cd nanopolish
make
```
and I obtained many warnings. Example:
```
file_image.…
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