issues
search
epigen
/
RnBeads
Git working Repo synced to the Bioconductor: http://bioconductor.org/packages/devel/bioc/html/RnBeads.html
https://rnbeads.org/
7
stars
8
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Infinium MethylationEPIC v2.0 normalization methods
#57
christpa
opened
3 days ago
0
dot-dot notation (`..count..`) deprecated in ggplot2 3.4.0.
#56
shkushwaha
opened
2 weeks ago
0
Error in order(...) : argument 1 is not a vecto
#55
Arsoy752
closed
1 month ago
0
Some IDAT files are not present in the supplied base directory
#54
jennyujin22
closed
1 month ago
2
Format report text / Implement function for gene symbol retrieval
#53
bariskalem
closed
5 months ago
0
Fix typo of probesMMBC in rnb.get.snp.matrix()
#52
bariskalem
closed
5 months ago
0
Support for the new annotation package / Bug fixes / nv probes section
#51
bariskalem
closed
5 months ago
0
The loaded bed file has less columns than expected, check the correctness of column assignment (or the BED style option)
#50
mehmet-cay
closed
6 months ago
2
EPIC v2 / Compatibility "WIP"
#49
bariskalem
closed
7 months ago
1
hclustfun(distr) : NA/NaN/Inf in foreign function call (arg 10)
#48
VivianBailey
opened
8 months ago
1
Possible to perform cell-type correction and paired analysis?
#47
KristenKrolick
opened
8 months ago
0
Infinium MethylationEPIC v2.0 Kit
#46
jozsefkun
opened
9 months ago
33
Problems: CpG annotation
#45
dnalinkbi
opened
10 months ago
1
R Error in h(simpleError(msg， call))
#44
mumdark
closed
11 months ago
3
Beta Matrix Input Using MMBC
#43
sjthursby
opened
1 year ago
5
Exploratory Analysis: Error in h(simpleError(msg, call))
#42
jofa123
opened
1 year ago
0
EPIC data normalization
#41
TatiMoe
opened
1 year ago
2
Error in import data directly from GEO（rnb.read.geo）
#40
mumdark
opened
1 year ago
2
Problem: Estimating Optimal Numbers of Clusters
#39
mariacastillo982
opened
1 year ago
5
ERROR: Some IDAT files are not present in the supplied base directory
#38
TatiMoe
closed
3 months ago
2
Error in differential variability with paired setup
#37
alex-d13
closed
1 year ago
2
dpval lacks scientific notation
#36
kimsjune
closed
1 year ago
2
Error with Graphics API version since I upgraded my R version
#35
AlejRSosa
closed
3 months ago
3
Availability of MMBC functional annotation
#34
kimsjune
closed
1 year ago
1
invalid data.source parameter, bed.dir is not found, or is not directory
#33
robert-player
opened
1 year ago
10
ERROR Undefined platform; unexpected or missing IDAT files
#32
mishraa31
opened
1 year ago
2
Is ~sample_type + time_point analysis possible in rnb.execute.computeDiffMeth?
#31
naumenko-sa
opened
2 years ago
0
RnBeads error on HPC
#30
bioinfonext
opened
2 years ago
0
Error in rnb.region.types.for.analysis("hg19") : invalid value for rnb.set
#29
xlucpu
opened
2 years ago
0
Update differentialMethylation.R
#28
ClarissaFeuersteinAkgoz
closed
2 years ago
5
get.table and Cg_id??
#27
ClarissaFeuersteinAkgoz
opened
2 years ago
0
Problems during EPIC array preprocessing - normalization step
#26
justannwska
opened
2 years ago
0
error: unsupported annotation type in 'annotation' function for hg38
#25
ArashDepp
closed
2 years ago
8
sesame SigSet to SigDF
#24
zwdzwd
closed
3 years ago
0
HPC submission issues.
#23
sunabcun
closed
3 months ago
2
ff function issues?
#22
sunabcun
closed
3 years ago
4
Bug on LOLA
#21
pietrisko
closed
3 years ago
3
BeadArray hg38 annotation
#20
demuellae
closed
3 months ago
0
Implement bead count filtering for microarrays
#19
schmic05
opened
3 years ago
0
Potential shift in HM450K 'rs' probes annotation in rnb.set
#18
YoannPa
opened
3 years ago
0
RnBeadsDJ does not start
#17
schmic05
closed
3 years ago
2
Restartable analysis
#16
demuellae
opened
3 years ago
1
Functional normalization for EPIC data
#15
schmic05
opened
3 years ago
1
Support for the Illumina Mouse Array
#14
schmic05
closed
3 months ago
8
Setting options for RnBeads: cell-type and diff. methylation for continuous data
#13
samuel-carleial
opened
3 years ago
1
pOOBAH and sesame by Nathan Steenbuck
#12
schmic05
closed
3 years ago
4
Running RnBeads in a computing cluster (Ghostscript needed?)
#11
samuel-carleial
closed
3 years ago
6
Using the latest ff package breaks the BigFfMat function
#10
berguner
closed
3 years ago
0
GO enrichment analysis fails in R 4.0
#9
berguner
closed
3 years ago
6
Question on import methylation intensity
#8
yeswzc
closed
4 years ago
8
Next