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@cmungall @jnguyenx @kshefchek @TomConlin @balhoff
Opening an issue to begin discussing how G2P data from webphenote models will inter-operate with existing G2P data when loaded into SciGraph. Seve…
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Hello,
My Phentype.txt is the file, the header of which is as below.
Phenotype SNP beta se effect_allele other_allele eaf pval
Then I attempted to run the codes as below.
> outcome_dat2
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Not all of these will make sense together, or maybe they should be put together with other categories. These can go in 'subject_category' or 'object_category':
"variant"
"gene"
"disease"
"phenotype"…
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Regarding variables from `participants.tsv` or within `phenotype/`:
1) Add as regressor(s) to existing contrasts
2) Correlate variable(s) with existing contrasts
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What would be the best way to incorporate environmental data? Is it possible to link phenoscape and other semantic phenotype representations to ENVO?
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I am using the test data with the commands outlined in the manual and am getting an error when using the epistatic.correlation function. Any suggestions?
> library(WISH)
> library(data.table)
dat…
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The ODK [65] is already used by some phenotype ontologies to drive template-driven development, QC, and ontology releases. We will extend the ODK to make QC reports more powerful and easier to underst…
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Supply URLs for PomBase data sources.
for these
PomBase phenotypes https://www.pombase.org/downloads/phenotype-annotations
GO data. https://www.pombase.org/downloads/go-annotations
cerevisia…