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### Description of the bug
FYI, **ASV_seqs.fasta** is present in the work directory (b12ddbfb05b35bef6eb415cb9f1ef0). I've no clue on the origin of the error.
```
ERROR ~ Error executing process …
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When adding a fastani reference to the command-line using "-resume --fastani_ref ncbi_dataset/data/GCF_000195955.2/GCF_000195955.2_ASM19595v2_genomic.fna", do I need to use that entire name (GCF_00019…
DrB-S updated
11 months ago
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In pangolin 4.0.6, the column qc_note has been introduced into the lineage report. I wanted to clarify if the term 'Ambiguous_content' in the qc note column is as same as 'N_content'.
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@kbeckenrode, would you help review that the source, evidence, and frequency are all correct?
I see that the microbe directory sometimes has 'unknown' or 'exp' in the Evidence column and
'usually', …
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@eric-czech has an initial proposal at https://github.com/pystatgen/sgkit-publication/blob/main/content/01.outline.md.
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### Description of feature
I can add a module to Ampliseq that would produce a phyloseq object. I think the main benefit of a phyloseq object comes from the fact that R is a popular language for data…
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@jmtsuji Is there any quick read-level way of detecting if there is a high likelihood of multiple genomes being present before assembly? If my employers commercialize this, there is a high probability…
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Hello,
I used Braker2 to annotate several sofmasqued genomes of lepidoptera. As I do not have RNAseq data, I used the Arthropoda db from OrthoDB. I ran every species with the following commands:
…
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Helllo,
I used the function "mSTAT_convert_phyloseq_to_data_obj" to convert from phyloseq to ms-object. This works well.
However, when I am exploring alpha diversity, by mStat_calculate_alpha_dive…
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Draft content for block 2 of the workshop.
superset of issues #24, #25, #26.
Getting data from:
- list of Genbank IDs (@KatherineCaley todo)
- EnsemblLite (@GavinHuttley todo)
- Published…