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Thank you for creating this useful program.
When running it on actual data, I noticed `sam_to_fastq.py` has poor performance due to `extract_bin_long_fastqs` opening the SAM file repeatedly and usi…
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# User story
As a user, I want injection information (such as injection volume, etc) parsed from comments in Labtracks.
# Acceptance criteria
- [x] Find regex patterns in comments that can be par…
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Hey developer,
Thanks for your efforts to develop this tool.
I have successfully installed the genomad via mamba:
mamba create -n genomad -c conda-forge -c bioconda genomad
and
genomad…
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Hey there,
I could start another branch of development where I could evaluate the use of other solvers besides gurobi. It seems we have several other open source alternatives, much easier to instal…
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`metaMDBG` is a phenomenal tool for assembling metagenomic data. During my testing, I found that I could construct small plasmids where other popular long-read assemblers could not.
One of the bigg…
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**Submitting author:** @SarahMaman (MAMAN Sarah)
**Repository:** https://forgemia.inra.fr/bios4biol/intronseeker
**Branch with paper.md** (empty if default branch): master
**Version:** v1.0
**Editor:*…
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Hi,
attached are some corrections and suggestions for the manuscript text based on my review.
https://github.com/gbouras13/dnaapler/blob/7c67b3beb930c9e2a1e031612841bc7541aa6915/paper/paper.md?p…
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Dear @tnrich, dear all,
I really like the software. The graphics and simple interface are one of the best I've tried.
One thing that may be missing is a navigation window or visual so I can switch…
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Hi, I am trying to test mob_cluster to build a large database of plasmids. While testing I have run into a KeyError on line 532 in mob_cluster.py.
`mob_cluster --mode build -f plasmid_multifasta.f…