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We found the PTI signalling term yesterday, hooray!
so when this is done:
https://github.com/geneontology/go-ontology/issues/18033
please add synonyms to
GO:0002221 pattern recognition rece…
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Hi,
I have a question regarding the structure modeling software SPIRED. Can it predict multi-chain structures, or is it limited to single-chain predictions?
Thank you!
jong3 updated
3 weeks ago
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Hello!
Thank you for publishing your work! I'm currently experimenting with your software, and I have some ideas in mind, but I am not sure to what extent they are practical and possible with RFdi…
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Hi, I am trying to model protein complexes with 2 or more proteins with different copy number for each of them. Usually, everything goes very well when the number of proteins or their copy number is l…
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Code by @peterjc
Submitted by @kianho
http://www2.warwick.ac.uk/fac/sci/moac/people/students/peter_cock/python/protein_contact_map/
(@kianho -I have a modified version of this as a complete snippet …
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Following the Tuesday discussion, I have created a
lineage for canonical amino acid residues from
bioontology as follows:
%CHEBI:24432 biological function ontology
%CHEBI:33694 biopolymers
%CHEBI:336…
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Dear TIES developers,
I would like to setup some FEP simulations for a protein-peptide system where I mutate a residue of the peptide. This seems similar to TIES-PM (https://doi.org/10.1021/acs.jct…
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In SequnceOntology.java, we have:
```
// types
so.put("DNA", URI.create(URI_PREFIX + "SO:0000352"));
so.put("PROTEIN", URI.create(URI_PREFIX + "SO:0001217"));
so.put("COMPLEX", URI.create(URI_PRE…
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Date: Monday 11th Dec 2023
Time: 5pm GMT ([other times](https://www.timeanddate.com/worldclock/meetingdetails.html?year=2023&month=11&day=13&hour=17&min=0&sec=0&p1=233&p2=136&p3=37&p4=771&p5=235&p6=1…
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```
---------------------------------------------------------------------------
ValueError Traceback (most recent call last)
Cell In[2], line 1
----> 1 model = esm.p…