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It's a great honor to read your article, but I really hope to see your training network. I would be grateful if you could provide it!
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I went back and had a look at the [NGL viewer](https://opensourceantibiotics.github.io/murligase/ngl/examples/MurDwebapp.html?script=interactive/MurD_ligand-viewer) of Fragment 373 for MurD (#1) and n…
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## Your Environment
* **F@H Software version**: 7.6.13
* **Operating System**: CentOS 8
* **Browser**: n/a
----
## Expected Behavior
Normally when using the API to get the trajectory relevan…
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Dear support team,
I am trying to run adaptive MDs after a long time and failing.
I am processing epoch 1 and it should be fast. However, the adaptive.py script is (repeatedly) taking a long time…
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NOTE: if this is not a bug report, please use the [GitHub Discussions](https://github.com/facebookresearch/esm/discussions) for support questions (How do I do X?), feature requests, ideas, showcasing …
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### Background
Pathway knowledge describing interactions between proteins and other biological molecules is essential for interpreting and integrating diverse genomics data, understanding disease mec…
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```
hh-suite commit ID b1aa73afae4811c7
Operating system: linux, compiler: gnu 4.9.2
```
Hi,
When using both pdb and pfam:
`hhsearch -d /home/ucgajhe/levine/databases/pdb70/pdb70 -ssm 4 …
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We are working on annotation documentation for MF-to-BP relations and would like to assess the extent to which relations, other than 'part of', have been used to link MFs to BPs in Noctua.
We would…
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I would like to suggest replacing the boolean representation of GPR associations with a true Gene-Protein-Reaction association schema.
Here are few reasons for this:
1. Gene expression is not bo…
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Hey @a-r-j, just pinging back here as promised yesterday with what probably could be considered a design doc for Graphein. I'm excited about this! I also know that my memory is gradually degrading as …