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add tests of the C++ component of the repository. please add more as desired
Big Book o' Tests:
- [x] preflight: `pytest` and `snakemake` available in run environment
- [x] single rule
- [x] m…
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Hi everyone,
i am trying to analyse ATAC-seq data with snakepipes. Currently, I am facing an error during the DNA-mapping workflow. Before that, I have created an index for GRCm38. I have crossed …
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I am trying to run paired end reads of mouse fastq files. Im not sure how to resolve the error that i keep getting. My config.yml:
```
samples: config/samples.tsv
units: config/units.tsv
ref…
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## Describe the feature you'd like to see
PyPSA-Earth shall be tested to execute all continents. This means (a) having the cutouts for all continents and (b) locally test the execution of the d…
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Hello,
I have a question regarding the use of normal samples in ScanNeo2.
According to the information provided in the data section of the wiki, it states:
"In addition, normal allows to specif…
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### Context
@huddlej's response to a [discussion question](https://discussion.nextstrain.org/t/why-do-my-sequences-end-up-in-excluded-by-diagnostics-txt/1250) prompted me to take a closer look at the…
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It looks like there is an update workflow view (intended to be done from the interface?) and then another API view to just rename the workflow - should we have both of these or perhaps just an update …
vsoch updated
3 years ago
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**Issue**
The second round of execution of the workflow `targeted_seq_cnv_calling` leads to conflict of input for step `targeted_seq_cnv_calling_gcnv_scatter_intervals`.
**To Reproduce**
Steps to…
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Hey,
I'm trying to convert from running HATCHet v0 to HATCHet v1 and I'm running into an issue with the `count_alleles` step. Here's the traceback message. I'm using hatchet 1.0.1 downloaded via b…
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Hello, we are trying out CNVpytor v.1.2.1 for possible inclusion in our snakemake pipeline in which we would import the read depth, predict CNV regions and output as .vcf format for use in programs as…