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snakemake-workflows
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rna-seq-star-deseq2
RNA-seq workflow using STAR and DESeq2
MIT License
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Pathway Enrichment Analysis
#86
bouchetj
closed
2 days ago
1
Update samples.tsv
#85
vaalers
closed
1 month ago
0
MissingInputException (diffexp.smk, line 1)
#84
vaalers
closed
1 month ago
1
`Align` step fails with `could not open input file /geneInfo.tab`
#83
benostendorf
opened
3 months ago
5
chore(master): release 2.1.2
#82
github-actions[bot]
closed
3 months ago
1
fix: use derived input for star_index
#81
bilalshaikh42
closed
3 months ago
1
chore(master): release 2.1.1
#80
github-actions[bot]
closed
5 months ago
1
fix: release-please branch to `master` and set permissions
#79
dlaehnemann
closed
5 months ago
0
perf: update all wrapper to latest v3.5.3
#78
dlaehnemann
closed
5 months ago
0
docs: make example `config/config.yaml` consistent with `config/samples.tsv`
#77
dlaehnemann
closed
5 months ago
0
fix: remove unused ftp RemoteProvider
#76
dlaehnemann
closed
5 months ago
1
chore: dummy commit to trigger ci testing
#75
dlaehnemann
closed
5 months ago
1
Issue running site-packages
#74
bbidonb
closed
5 months ago
3
base_level and level_of_interest in example config.yaml
#73
keksundso
closed
5 months ago
1
Failed to run with cutadapt
#72
cchapus
closed
5 months ago
1
specify snakelike version during installation?
#71
ceesu
closed
7 months ago
6
fix: Fixing workflow for single-end sequencing
#70
Wolfffff
closed
9 months ago
9
fix: update gffults & qc
#69
hmkim
closed
10 months ago
3
AttributeError: module 'sqlite3' has no attribute 'OptimizedUnicode'
#68
hmkim
closed
10 months ago
2
correct installation of workflow with R
#67
ceesu
closed
1 year ago
2
feat!: generalize away condition
#66
dlaehnemann
closed
1 year ago
2
Pipeline failing with cutadapt
#65
aryazand
closed
1 year ago
4
feat: add release-please and use conventional commits
#64
dlaehnemann
closed
1 year ago
0
fix: make specification of SRA samples in samples.tsv work (common.smk)
#63
dlaehnemann
closed
1 year ago
0
fix: make `get_deseq2_threads()` proper function call in diffexp.smk
#62
dlaehnemann
closed
1 year ago
0
fixed trimmed fastq filename in get_fq()
#61
aryazand
closed
1 year ago
2
fix: stable column ordering in count-matrix.py
#60
cbp44
closed
1 year ago
0
Updated all wrappers to most current version
#59
isaacvock
closed
1 year ago
6
Multiqc error: module 'collections' has no attribute 'Mapping'
#58
isaacvock
closed
1 year ago
3
improve environment specifications
#57
mfansler
closed
1 year ago
2
Data availability?
#56
vsoch
closed
1 year ago
2
Costum genome as reference
#55
seb-mueller
closed
1 year ago
1
Error in code
#54
bhimbbiswa
closed
1 year ago
1
Condition in samples.tsv is too specific
#53
jonathandmoore
closed
1 year ago
7
Problem when defining SRA accession instead of fq1/fq2 hardfiles
#52
plycrsk
closed
1 year ago
0
Pipeline is delisted in Snakemake workflow catalog
#51
aerval
closed
2 years ago
1
read_distribution.py
#50
Moonerss
closed
1 year ago
1
Fix for GitHub Actions, and fix to avoid potential column reordering in count-matrix.py
#49
cbp44
closed
1 year ago
3
Fix for GitHub Actions and fix for column sorting issue in count-matrix.py
#48
cbp44
closed
2 years ago
0
Bugfix – Fix broken GitHub Action jobs
#47
cbp44
closed
2 years ago
1
Bugfix – Avoid potential column reordering in count-matrix.py
#46
cbp44
closed
2 years ago
1
SyntaxError in line 14 of Snakefile
#45
Blosberg
closed
1 year ago
1
Fix ValueError
#44
alienzj
closed
1 year ago
4
config.yaml defaults
#43
neavemj
closed
1 year ago
1
trim.smk file name
#42
neavemj
closed
1 year ago
4
Bugfix
#41
kilpert
closed
1 year ago
2
Bugfix
#40
kilpert
closed
3 years ago
0
Gene2symbol
#39
jafors
closed
3 years ago
0
fix formatting for new version of super-linter
#38
jafors
closed
3 years ago
0
Adapting Lparsons updates
#37
jafors
closed
3 years ago
0
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