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Hi
I have had successful runs with mummer2circos but this time it fails with the following error:
```
Traceback (most recent call last):
File "/home/subudhak/miniconda3/envs/mummercircos/bin…
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Hi,
I am trying to run strelka2 in somatic mode on high depth data (~3570.95X) on a small gene panel (trusight) but the job never ends. I killed the job after 15h.
This is the command line that …
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Thank you very much for the nice tool. I was wondering how suitable is starchip for amplicon based fusion detection in RNA-seq workflows (targeted amplicon-based RNA-seq using reverse-transcribed cDNA…
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Hi I've noticed there're problematic sites added for V4 as well. Great work guys!
Just wondering if we can have an additional column for the particular setting (sequencing platforms, amplicon version…
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Need to flag this up as coverage for this exon may not be reported
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Hello!
I'm experiencing some issues with RAMPART and I'm wondering if there is a solution available. I would like to know if anyone has been able to resolve similar problems.
In our laboratory, …
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Thank you for this very useful tool! I have been using it for DNA metabarcoding of analysis of several markers (e.g. COI, trnl, and 16S) with eDNA samples in multiplex reactions and has proved great. …
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Hi,
I would like to analyse multiple samples at once after demultiplexing. As input data I have one fasta file for each sample and each amplicon.
I'm not sure how to organise my data and I coul…
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I would like to use LACA for shorter amplicons (600 bp) from ONT sequencing.
Can you provide the following options in the laca init so that the config file can work with alternative sequence input…
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