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## **Describe the bug**
when i append the tss file ,it show this mistake
## **OS/Platform**
- Caper version: 2.1.3
## **Caper configuration file**
2022-04-11 21:37:00,784|caper.cli|INFO| Crom…
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I have installed snakepipes and downloaded ATACseq example for test run. However, the example does not run as I expected.
I first run following the suggestion from command.sh and get this:
#####
(s…
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HI
I tried to press the "ATAC-seq Data analysis" bottom, but there was no response, the window still stop at first screen. However, when I press the "ATAC-seq Differentially analysis", there was a r…
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> cat PUMATAC_tutorial-main/PUMATAC/src/singlecelltoolkit/processes/barcode_correction.nf
nextflow.enable.dsl=2
//binDir = !params.containsKey("test") ? "${workflow.projectDir}/src/singlecelltoolk…
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Dear respected author,
Hello! I am thrilled and deeply inspired after reading your work, as I am currently seeking methods to distinguish diploid and tetraploid cells in plant scRNA-seq data. I w…
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Dear Guanjue,
Thanks for inventing such great software which is quite helpful.
But nowadays when I tried to normalize a 4-sample single-end ATAC-seq data by S3norm. The result is weird, I can't find…
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I am struggling to understand, why the "Filter Option: Remove PCR duplicates” in the Genrich tool is set to "Yes" after running the MarkDuplicates tool with “If true do not write duplicates to the out…
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Dear muon-team,
I have converted my scATAC-seq SeuratObject to a mudata object but the information on the fragments files does not seem to be transferred. mdata.uns is empty.
My object is a merge…
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Hi, team!
I am trying the chip-seq-pipeline2 and atac-seq-pipeline using "local" backend.
Both the pipeline stalled at "task=chip.read_genome_tsv:-1, retry=0, status=WaitingForReturnCode".
About …