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Dear Honzee,
Is it possible to get the random forest support values for each chromosome arm in txt format instead of png format?
I am analyzing many samples and it is painstaking to manually check…
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Hello Author,
Now, I am using Pindel and like to increase its speed in addition to multithreading. I was wondering what Pindel results would be lost/missed if I ran Pindel chromosome by chromosome.
…
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Thanks for providing the tool to call small variants for ONT data. In the scripts, such as **merge.py** and **make_predict_data.sh**, the chromosome ID starts with "chr". However, the reference genome…
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Hello,
I noticed that you've modeled eQTLs on the X chromosome and I'm wondering whether is possible to make predictions of overall expression for haploid individuals (i.e. men) using the "slope" c…
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Hi,
Should it work with a multi fasta file?
>chr1
>chr2
etc..
Thanks,
Raz
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Hi, in Glimpse 2 concordance when using `--out-r2-per-site` and multiple chromosomes in `--input`, only variants in the last chromosome appear in the output.
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### Description of the bug
Hello!
Firstly, thank you for the tool.
I used it long time ago, and now tried to install the newest version (v2.0.0-beta.3) using
```
nextflow run pgscatalog/pgsc_calc…
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Hi ,
I stumbled upon your package and it seems quite useful. I have quite a few files containing chromosomal coordinates and would like to check the regulatory elements within those chromosomal co…
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Hello Geroge, such a great tool you have in hybracter!!
I have been using it to assemble some ONT only genomes, without using medaka, and I have seen that even though dnaapler is run on the chromos…
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As a bioinformatician I want easily generate a bed file for gene panels to use within bioinformatics pipelines.
This will require data from the Panel App API to be converted into a tab-separated .b…