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[//]: # (You can add comment regarding your issue hereafter)
### Comments
- definition was incorrect (definition of epigenomics), substituted by current comment entry which is a more correct def of …
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Test out different single-cell epigenomics softwares and see what kind of analyses can be done.
- [ArchR](https://github.com/GreenleafLab/ArchR)
- [Signac / Seurat](https://satijalab.org/signac/…
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I was trying to initialize a PEP I got from GEO using `geofetch` and `peppy` threw this error: `yaml.scanner.ScannerError: mapping values are not allowed here`
Here is the project config:
```yam…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/ManonCoulee/ChromENVEE
Confirm the following by e…
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Hi,
I got the following error while trying to concatenate data objects using anndata.concat()
ad.concat([data1,data2]) where data1 and data2 are created by importing fragment data in the standar…
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https://mp.weixin.qq.com/s/FlX3IY7b2rdk1_gSfo7eMg
ixxmu updated
2 years ago
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I was attempting to work on an issue by @beamilon and came across a private dataset in a public profile
Profile - scRNA-seq - Chicken basilar papilla (Heller 2021)
Dataset - Chicken Basilar Papill…
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Do you have a short description of what each of the cell lines used in Beluga are? Thanks!
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Hi there,
Forgive me if this is very basic, I am very new to this kind of data analysis.
I have 10X genomics scATAC-seq data that I am trying to run mgatk on. I was trying to run bcall on the …
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Paper:
Integrated single-cell transcriptomics and epigenomics reveals strong germinal center–associated etiology of autoimmune risk loci
https://www.science.org/doi/10.1126/sciimmunol.abh3768
Si…