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Hello,
I have some clusters with differentially expresses genes generated using Seurat. I also have a highly curated gene list and I wish to perform enrichment analysis using these on each cluster …
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Dear Minos/Mikado developers,
I am trying to use Minos to improve a Braker-derived gene annotation; however, I am having trouble building the Singularity image of Mikado.
```
(base) [jmarteloss…
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It should have three sections:
Upload background
Upload a new resource
Upload a new library of signatures
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In Sep 2022 GSEA released a new Mouse MSigDB (v2022.1.Mm) list of genes.
This doesn't seem to be incorporated in the [`msigdbr`](https://github.com/igordot/msigdbr) package, which still uses ortholo…
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Bonjour @julibinho @SamuelLlm @NataliyaSokolovska
I have a question for some clear aims of our project,
I've thought that the purpose is to see common significant results of both clustering with…
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Hi Guangchuang, I would like to only plot a subset of results from compareCluster.
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Hi,
I am working on the Single cell analysis using Seurat. I am new to the SingleR, It is really very useful for the single cell level cell type prediction. I have read the SingleR documentation, bu…
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Dear developers,
I am currently using UCell version 2.6.2 in a possibly unconventional way. Specifically, I am scoring up- and down-regulated disease signatures in my single-cell population dataset, …
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Hi,
The samples sequenced in more depth will have more counts. So, are the estimated reference expression signatures generated by mod.export_posterior() normalized or scaled or just the inferred coun…